Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y97    

Bonds between two atoms of the molecule

Total Number of Bonds: 73


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C01 C02 C C sing 1.53 N N
2 C02 N03 C N sing 1.47 N N
3 C02 C18 C C sing 1.51 N N
4 N03 C04 N C sing 1.35 N N
5 C19 C18 C C doub 1.38 N Y
6 C19 C20 C C sing 1.38 N Y
7 C18 C35 C C sing 1.38 N Y
8 O32 C33 O C sing 1.44 N N
9 O32 C31 O C sing 1.44 N N
10 C20 C21 C C doub 1.38 N Y
11 C07 C06 C C sing 1.51 N N
12 C04 C05 C C sing 1.48 N N
13 C04 O17 C O doub 1.22 N N
14 C33 C29 C C sing 1.54 N N
15 C13 N14 C N sing 1.48 N N
16 C13 C12 C C sing 1.54 N N
17 C35 C22 C C doub 1.4 N Y
18 C06 C05 C C doub 1.4 N Y
19 C06 C08 C C sing 1.38 N Y
20 C05 C16 C C sing 1.39 N Y
21 C31 C30 C C sing 1.55 N N
22 N14 C15 N C sing 1.47 N N
23 C08 C09 C C doub 1.38 N Y
24 C21 C22 C C sing 1.4 N Y
25 C12 C15 C C sing 1.54 N N
26 C12 N11 C N sing 1.47 N N
27 C16 C10 C C doub 1.39 N Y
28 C22 C23 C C sing 1.48 N N
29 C09 C10 C C sing 1.39 N Y
30 C10 N11 C N sing 1.4 N N
31 C29 C30 C C sing 1.55 N N
32 C29 N28 C N sing 1.47 N N
33 S34 C23 S C sing 1.76 N Y
34 S34 C26 S C sing 1.76 N Y
35 C23 C24 C C doub 1.35 N Y
36 N28 C27 N C sing 1.47 N N
37 C24 C25 C C sing 1.38 N Y
38 C26 C27 C C sing 1.51 N N
39 C26 C25 C C doub 1.34 N Y
40 C01 H1 C H sing 1.09 N N
41 C01 H2 C H sing 1.09 N N
42 C01 H3 C H sing 1.09 N N
43 C02 H4 C H sing 1.09 N N
44 C07 H5 C H sing 1.09 N N
45 C07 H6 C H sing 1.09 N N
46 C07 H7 C H sing 1.09 N N
47 C08 H8 C H sing 1.08 N N
48 C09 H9 C H sing 1.08 N N
49 C12 H10 C H sing 1.09 N N
50 C13 H11 C H sing 1.09 N N
51 C13 H12 C H sing 1.09 N N
52 C15 H13 C H sing 1.09 N N
53 C15 H14 C H sing 1.09 N N
54 C16 H15 C H sing 1.08 N N
55 C19 H16 C H sing 1.08 N N
56 C20 H17 C H sing 1.08 N N
57 C21 H18 C H sing 1.08 N N
58 C24 H19 C H sing 1.08 N N
59 C25 H20 C H sing 1.08 N N
60 C27 H21 C H sing 1.09 N N
61 C27 H22 C H sing 1.09 N N
62 C29 H23 C H sing 1.09 N N
63 C33 H24 C H sing 1.09 N N
64 C33 H25 C H sing 1.09 N N
65 N03 H26 N H sing 0.97 N N
66 N11 H27 N H sing 0.97 N N
67 N14 H28 N H sing 1.01 N N
68 N28 H30 N H sing 1.01 N N
69 C30 H32 C H sing 1.09 N N
70 C30 H33 C H sing 1.09 N N
71 C31 H34 C H sing 1.09 N N
72 C31 H35 C H sing 1.09 N N
73 C35 H36 C H sing 1.08 N N