data_Y97
#
_chem_comp.id Y97
_chem_comp.name
5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(3~{R})-oxolan-3-yl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H34 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-02-11
_chem_comp.pdbx_modified_date 2021-02-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 490.660
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code Y97
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7LOS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y97 C01 C1 C 0 1 N N N N N N 1.832 12.044 32.128 -1.153 1.385 -2.719 C01 Y97 1
Y97 C02 C2 C 0 1 N N R N N N 1.792 11.758 33.677 -1.146 1.021 -1.233 C02 Y97 2
Y97 C04 C3 C 0 1 N N N N N N 2.005 9.713 35.267 -3.273 1.854 -0.385 C04 Y97 3
Y97 C06 C4 C 0 1 Y N N N N N 1.467 7.180 35.505 -5.397 2.698 0.605 C06 Y97 4
Y97 C07 C5 C 0 1 N N N N N N 0.014 7.482 35.006 -4.779 4.069 0.703 C07 Y97 5
Y97 C08 C6 C 0 1 Y N N N N N 1.888 5.854 35.845 -6.693 2.493 1.034 C08 Y97 6
Y97 C09 C7 C 0 1 Y N N N N N 3.205 5.545 36.293 -7.267 1.239 0.941 C09 Y97 7
Y97 C10 C8 C 0 1 Y N N N N N 4.182 6.559 36.440 -6.542 0.175 0.415 C10 Y97 8
Y97 C12 C9 C 0 1 N N N N N N 6.725 6.078 36.000 -8.502 -1.297 0.783 C12 Y97 9
Y97 C13 C10 C 0 1 N N N N N N 7.372 7.398 35.340 -9.504 -1.584 -0.344 C13 Y97 10
Y97 C15 C11 C 0 1 N N N N N N 8.168 5.855 36.644 -8.816 -2.742 1.196 C15 Y97 11
Y97 C16 C12 C 0 1 Y N N N N N 3.736 7.886 36.088 -5.240 0.371 -0.019 C16 Y97 12
Y97 O17 O1 O 0 1 N N N N N N 1.453 10.400 36.154 -2.809 2.977 -0.409 O17 Y97 13
Y97 C18 C13 C 0 1 Y N N N N N 2.771 12.719 34.474 -0.346 -0.240 -1.029 C18 Y97 14
Y97 C19 C14 C 0 1 Y N N N N N 4.150 12.626 34.256 -0.917 -1.470 -1.299 C19 Y97 15
Y97 C20 C15 C 0 1 Y N N N N N 5.035 13.448 34.977 -0.190 -2.633 -1.113 C20 Y97 16
Y97 C21 C16 C 0 1 Y N N N N N 4.529 14.350 35.946 1.111 -2.571 -0.657 C21 Y97 17
Y97 C22 C17 C 0 1 Y N N N N N 3.126 14.466 36.228 1.693 -1.332 -0.383 C22 Y97 18
Y97 C23 C18 C 0 1 Y N N N N N 2.525 15.443 37.315 3.086 -1.258 0.105 C23 Y97 19
Y97 C24 C19 C 0 1 Y N N N N N 3.004 16.143 38.416 3.892 -2.316 0.324 C24 Y97 20
Y97 C25 C20 C 0 1 Y N N N N N 1.980 16.964 39.180 5.153 -1.996 0.781 C25 Y97 21
Y97 C26 C21 C 0 1 Y N N N N N 0.701 16.865 38.662 5.384 -0.689 0.937 C26 Y97 22
Y97 C27 C22 C 0 1 N N N N N N -0.705 17.466 38.982 6.679 -0.090 1.421 C27 Y97 23
Y97 C29 C23 C 0 1 N N R N N N -1.089 18.620 36.524 8.828 0.768 0.708 C29 Y97 24
Y97 C33 C24 C 0 1 N N N N N N -2.104 18.712 35.291 9.869 -0.340 0.980 C33 Y97 25
Y97 N03 N1 N 0 1 N N N N N N 2.159 10.340 34.001 -2.522 0.806 -0.778 N03 Y97 26
Y97 C05 C25 C 0 1 Y N N N N N 2.411 8.207 35.634 -4.662 1.637 0.075 C05 Y97 27
Y97 N11 N2 N 0 1 N N N N N N 5.577 6.257 36.897 -7.126 -1.090 0.324 N11 Y97 28
Y97 N14 N3 N 0 1 N N N N N N 8.778 6.990 35.798 -9.163 -3.013 -0.211 N14 Y97 29
Y97 N28 N4 N 0 1 N N N N N N -1.574 17.681 37.690 7.554 0.181 0.272 N28 Y97 30
Y97 C30 C26 C 0 1 N N N N N N -0.974 20.118 36.960 9.457 1.602 -0.431 C30 Y97 31
Y97 C31 C27 C 0 1 N N N N N N -1.327 20.888 35.683 10.804 0.899 -0.712 C31 Y97 32
Y97 O32 O2 O 0 1 N N N N N N -2.044 20.080 34.815 10.615 -0.457 -0.251 O32 Y97 33
Y97 S34 S1 S 0 1 Y N N N N N 0.765 15.771 37.251 3.952 0.226 0.484 S34 Y97 34
Y97 C35 C28 C 0 1 Y N N N N N 2.290 13.616 35.463 0.955 -0.163 -0.577 C35 Y97 35
Y97 H1 H1 H 0 1 N N N N N N 1.557 13.092 31.941 -0.129 1.545 -3.059 H1 Y97 36
Y97 H2 H2 H 0 1 N N N N N N 2.847 11.858 31.747 -1.602 0.573 -3.291 H2 Y97 37
Y97 H3 H3 H 0 1 N N N N N N 1.120 11.381 31.614 -1.731 2.297 -2.868 H3 Y97 38
Y97 H4 H4 H 0 1 N N N N N N 0.769 11.951 34.031 -0.697 1.834 -0.662 H4 Y97 39
Y97 H5 H5 H 0 1 N N N N N N -0.023 7.397 33.910 -4.879 4.582 -0.253 H5 Y97 40
Y97 H6 H6 H 0 1 N N N N N N -0.685 6.759 35.453 -5.288 4.642 1.478 H6 Y97 41
Y97 H7 H7 H 0 1 N N N N N N -0.272 8.501 35.305 -3.723 3.974 0.956 H7 Y97 42
Y97 H8 H8 H 0 1 N N N N N N 1.173 5.049 35.758 -7.261 3.315 1.445 H8 Y97 43
Y97 H9 H9 H 0 1 N N N N N N 3.462 4.522 36.524 -8.281 1.085 1.279 H9 Y97 44
Y97 H10 H10 H 0 1 N N N N N N 6.532 5.323 35.224 -8.834 -0.546 1.500 H10 Y97 45
Y97 H11 H11 H 0 1 N N N N N N 7.016 8.337 35.788 -10.536 -1.358 -0.075 H11 Y97 46
Y97 H12 H12 H 0 1 N N N N N N 7.259 7.447 34.247 -9.213 -1.155 -1.303 H12 Y97 47
Y97 H13 H13 H 0 1 N N N N N N 8.598 4.865 36.431 -7.943 -3.295 1.543 H13 Y97 48
Y97 H14 H14 H 0 1 N N N N N N 8.202 6.044 37.727 -9.664 -2.825 1.877 H14 Y97 49
Y97 H15 H15 H 0 1 N N N N N N 4.448 8.694 36.172 -4.675 -0.454 -0.428 H15 Y97 50
Y97 H16 H16 H 0 1 N N N N N N 4.535 11.922 33.533 -1.935 -1.524 -1.656 H16 Y97 51
Y97 H17 H17 H 0 1 N N N N N N 6.098 13.392 34.793 -0.641 -3.591 -1.325 H17 Y97 52
Y97 H18 H18 H 0 1 N N N N N N 5.223 14.972 36.491 1.677 -3.479 -0.512 H18 Y97 53
Y97 H19 H19 H 0 1 N N N N N N 4.042 16.105 38.711 3.574 -3.335 0.155 H19 Y97 54
Y97 H20 H20 H 0 1 N N N N N N 2.226 17.566 40.042 5.899 -2.747 0.997 H20 Y97 55
Y97 H21 H21 H 0 1 N N N N N N -0.569 18.437 39.481 6.473 0.842 1.948 H21 Y97 56
Y97 H22 H22 H 0 1 N N N N N N -1.238 16.779 39.656 7.173 -0.788 2.097 H22 Y97 57
Y97 H23 H23 H 0 1 N N N N N N -0.113 18.270 36.158 8.681 1.383 1.595 H23 Y97 58
Y97 H24 H24 H 0 1 N N N N N N -3.125 18.468 35.619 10.529 -0.049 1.797 H24 Y97 59
Y97 H25 H25 H 0 1 N N N N N N -1.799 18.018 34.494 9.370 -1.281 1.214 H25 Y97 60
Y97 H26 H26 H 0 1 N N N N N N 2.546 9.788 33.262 -2.892 -0.090 -0.758 H26 Y97 61
Y97 H27 H27 H 0 1 N N N N N N 5.510 5.408 37.421 -6.621 -1.833 -0.043 H27 Y97 62
Y97 H28 H28 H 0 1 N N N N N N 9.373 6.675 35.059 -9.988 -3.589 -0.276 H28 Y97 63
Y97 H30 H30 H 0 1 N N N N N N -2.454 18.044 37.998 7.093 0.775 -0.401 H30 Y97 64
Y97 H32 H32 H 0 1 N N N N N N 0.048 20.354 37.292 8.822 1.579 -1.317 H32 Y97 65
Y97 H33 H33 H 0 1 N N N N N N -1.684 20.348 37.768 9.621 2.629 -0.106 H33 Y97 66
Y97 H34 H34 H 0 1 N N N N N N -0.400 21.217 35.190 11.022 0.910 -1.779 H34 Y97 67
Y97 H35 H35 H 0 1 N N N N N N -1.934 21.767 35.946 11.607 1.382 -0.155 H35 Y97 68
Y97 H36 H36 H 0 1 N N N N N N 1.226 13.653 35.643 1.401 0.799 -0.371 H36 Y97 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y97 C01 C02 SING N N 1
Y97 C02 N03 SING N N 2
Y97 C02 C18 SING N N 3
Y97 N03 C04 SING N N 4
Y97 C19 C18 DOUB Y N 5
Y97 C19 C20 SING Y N 6
Y97 C18 C35 SING Y N 7
Y97 O32 C33 SING N N 8
Y97 O32 C31 SING N N 9
Y97 C20 C21 DOUB Y N 10
Y97 C07 C06 SING N N 11
Y97 C04 C05 SING N N 12
Y97 C04 O17 DOUB N N 13
Y97 C33 C29 SING N N 14
Y97 C13 N14 SING N N 15
Y97 C13 C12 SING N N 16
Y97 C35 C22 DOUB Y N 17
Y97 C06 C05 DOUB Y N 18
Y97 C06 C08 SING Y N 19
Y97 C05 C16 SING Y N 20
Y97 C31 C30 SING N N 21
Y97 N14 C15 SING N N 22
Y97 C08 C09 DOUB Y N 23
Y97 C21 C22 SING Y N 24
Y97 C12 C15 SING N N 25
Y97 C12 N11 SING N N 26
Y97 C16 C10 DOUB Y N 27
Y97 C22 C23 SING N N 28
Y97 C09 C10 SING Y N 29
Y97 C10 N11 SING N N 30
Y97 C29 C30 SING N N 31
Y97 C29 N28 SING N N 32
Y97 S34 C23 SING Y N 33
Y97 S34 C26 SING Y N 34
Y97 C23 C24 DOUB Y N 35
Y97 N28 C27 SING N N 36
Y97 C24 C25 SING Y N 37
Y97 C26 C27 SING N N 38
Y97 C26 C25 DOUB Y N 39
Y97 C01 H1 SING N N 40
Y97 C01 H2 SING N N 41
Y97 C01 H3 SING N N 42
Y97 C02 H4 SING N N 43
Y97 C07 H5 SING N N 44
Y97 C07 H6 SING N N 45
Y97 C07 H7 SING N N 46
Y97 C08 H8 SING N N 47
Y97 C09 H9 SING N N 48
Y97 C12 H10 SING N N 49
Y97 C13 H11 SING N N 50
Y97 C13 H12 SING N N 51
Y97 C15 H13 SING N N 52
Y97 C15 H14 SING N N 53
Y97 C16 H15 SING N N 54
Y97 C19 H16 SING N N 55
Y97 C20 H17 SING N N 56
Y97 C21 H18 SING N N 57
Y97 C24 H19 SING N N 58
Y97 C25 H20 SING N N 59
Y97 C27 H21 SING N N 60
Y97 C27 H22 SING N N 61
Y97 C29 H23 SING N N 62
Y97 C33 H24 SING N N 63
Y97 C33 H25 SING N N 64
Y97 N03 H26 SING N N 65
Y97 N11 H27 SING N N 66
Y97 N14 H28 SING N N 67
Y97 N28 H30 SING N N 68
Y97 C30 H32 SING N N 69
Y97 C30 H33 SING N N 70
Y97 C31 H34 SING N N 71
Y97 C31 H35 SING N N 72
Y97 C35 H36 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y97 InChI InChI 1.03 InChI=1S/C28H34N4O2S/c1-18-6-7-22(32-24-14-29-15-24)13-26(18)28(33)31-19(2)20-4-3-5-21(12-20)27-9-8-25(35-27)16-30-23-10-11-34-17-23/h3-9,12-13,19,23-24,29-30,32H,10-11,14-17H2,1-2H3,(H,31,33)/t19-,23-/m1/s1
Y97 InChIKey InChI 1.03 JZRRCGQQCZGHEA-AUSIDOKSSA-N
Y97 SMILES_CANONICAL CACTVS 3.385 C[C@@H](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[C@@H]5CCOC5)cc4
Y97 SMILES CACTVS 3.385 C[CH](NC(=O)c1cc(NC2CNC2)ccc1C)c3cccc(c3)c4sc(CN[CH]5CCOC5)cc4
Y97 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1C(=O)N[C@H](C)c2cccc(c2)c3ccc(s3)CN[C@@H]4CCOC4)NC5CNC5
Y97 SMILES "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1C(=O)NC(C)c2cccc(c2)c3ccc(s3)CNC4CCOC4)NC5CNC5
#
_pdbx_chem_comp_identifier.comp_id Y97
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
5-(azetidin-3-ylamino)-2-methyl-~{N}-[(1~{R})-1-[3-[5-[[[(3~{R})-oxolan-3-yl]amino]methyl]thiophen-2-yl]phenyl]ethyl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y97 'Create component' 2021-02-11 RCSB
Y97 'Initial release' 2021-02-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
Y97 C01 C 10.764 -0.056 1
Y97 C02 C 9.465 -0.806 2
Y97 C04 C 10.764 -3.056 3
Y97 C06 C 12.063 -5.306 4
Y97 C07 C 13.362 -4.556 5
Y97 C08 C 12.063 -6.806 6
Y97 C09 C 10.764 -7.556 7
Y97 C10 C 9.465 -6.806 8
Y97 C12 C 8.166 -9.056 9
Y97 C13 C 9.226 -10.117 10
Y97 C15 C 7.105 -10.117 11
Y97 C16 C 9.465 -5.306 12
Y97 O17 O 12.063 -2.306 13
Y97 C18 C 8.166 -0.056 14
Y97 C19 C 6.867 -0.806 15
Y97 C20 C 5.568 -0.056 16
Y97 C21 C 5.568 1.444 17
Y97 C22 C 6.867 2.194 18
Y97 C23 C 6.867 3.694 19
Y97 C24 C 8.080 4.575 20
Y97 C25 C 7.617 6.002 21
Y97 C26 C 6.117 6.002 22
Y97 C27 C 5.235 7.215 23
Y97 C29 C 4.963 9.799 24
Y97 C33 C 3.463 9.799 25
Y97 N03 N 9.465 -2.306 26
Y97 C05 C 10.764 -4.556 27
Y97 N11 N 8.166 -7.556 28
Y97 N14 N 8.166 -11.178 29
Y97 N28 N 5.845 8.586 30
Y97 C30 C 5.427 11.226 31
Y97 C31 C 4.213 12.107 32
Y97 O32 O 3.000 11.226 33
Y97 S34 S 5.653 4.575 34
Y97 C35 C 8.166 1.444 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
Y97 C02 C01 SINGLE BEGINWEDGE 1
Y97 C02 N03 SINGLE NONE 2
Y97 C02 C18 SINGLE NONE 3
Y97 N03 C04 SINGLE NONE 4
Y97 C19 C18 DOUBLE NONE 5
Y97 C19 C20 SINGLE NONE 6
Y97 C18 C35 SINGLE NONE 7
Y97 O32 C33 SINGLE NONE 8
Y97 O32 C31 SINGLE NONE 9
Y97 C20 C21 DOUBLE NONE 10
Y97 C07 C06 SINGLE NONE 11
Y97 C04 C05 SINGLE NONE 12
Y97 C04 O17 DOUBLE NONE 13
Y97 C33 C29 SINGLE NONE 14
Y97 C13 N14 SINGLE NONE 15
Y97 C13 C12 SINGLE NONE 16
Y97 C35 C22 DOUBLE NONE 17
Y97 C06 C05 DOUBLE NONE 18
Y97 C06 C08 SINGLE NONE 19
Y97 C05 C16 SINGLE NONE 20
Y97 C31 C30 SINGLE NONE 21
Y97 N14 C15 SINGLE NONE 22
Y97 C08 C09 DOUBLE NONE 23
Y97 C21 C22 SINGLE NONE 24
Y97 C12 C15 SINGLE NONE 25
Y97 C12 N11 SINGLE NONE 26
Y97 C16 C10 DOUBLE NONE 27
Y97 C22 C23 SINGLE NONE 28
Y97 C09 C10 SINGLE NONE 29
Y97 C10 N11 SINGLE NONE 30
Y97 C29 C30 SINGLE NONE 31
Y97 C29 N28 SINGLE BEGINWEDGE 32
Y97 S34 C23 SINGLE NONE 33
Y97 S34 C26 SINGLE NONE 34
Y97 C23 C24 DOUBLE NONE 35
Y97 N28 C27 SINGLE NONE 36
Y97 C24 C25 SINGLE NONE 37
Y97 C26 C27 SINGLE NONE 38
Y97 C26 C25 DOUBLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
Y97 MurckoScaffold S1 scaffold 'O=C(NCc1cccc(-c2ccc(CN[C@@H]3CCOC3)s2)c1)c1cccc(NC2CNC2)c1' InChI=1S/C26H30N4O2S/c31-26(20-5-2-6-21(12-20)30-23-14-27-15-23)29-13-18-3-1-4-19(11-18)25-8-7-24(33-25)16-28-22-9-10-32-17-22/h1-8,11-12,22-23,27-28,30H,9-10,13-17H2,(H,29,31)/t22-/m1/s1 RGOOVCWCEZHWAS-JOCHJYFZSA-N
Y97 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
Y97 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
Y97 thiophen F3 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
Y97 C02 S1 1
Y97 C04 S1 1
Y97 C06 S1 1
Y97 C08 S1 1
Y97 C09 S1 1
Y97 C10 S1 1
Y97 C12 S1 1
Y97 C13 S1 1
Y97 C15 S1 1
Y97 C16 S1 1
Y97 O17 S1 1
Y97 C18 S1 1
Y97 C19 S1 1
Y97 C20 S1 1
Y97 C21 S1 1
Y97 C22 S1 1
Y97 C23 S1 1
Y97 C24 S1 1
Y97 C25 S1 1
Y97 C26 S1 1
Y97 C27 S1 1
Y97 C29 S1 1
Y97 C33 S1 1
Y97 N03 S1 1
Y97 C05 S1 1
Y97 N11 S1 1
Y97 N14 S1 1
Y97 N28 S1 1
Y97 C30 S1 1
Y97 C31 S1 1
Y97 O32 S1 1
Y97 S34 S1 1
Y97 C35 S1 1
Y97 N03 F1 1
Y97 C04 F1 1
Y97 O17 F1 1
Y97 C05 F1 1
Y97 C06 F2 1
Y97 C05 F2 1
Y97 C16 F2 1
Y97 C10 F2 1
Y97 C09 F2 1
Y97 C08 F2 1
Y97 C18 F2 2
Y97 C19 F2 2
Y97 C20 F2 2
Y97 C21 F2 2
Y97 C22 F2 2
Y97 C35 F2 2
Y97 C23 F3 1
Y97 C24 F3 1
Y97 C25 F3 1
Y97 C26 F3 1
Y97 S34 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id Y97
_pdbe_chem_comp_rdkit_properties.exactmw 490.240
_pdbe_chem_comp_rdkit_properties.amw 490.673
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 69
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.393
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 259.029
_pdbe_chem_comp_rdkit_properties.tpsa 74.420
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.497
_pdbe_chem_comp_rdkit_properties.CrippenMR 139.949
_pdbe_chem_comp_rdkit_properties.chi0v 17.830
_pdbe_chem_comp_rdkit_properties.chi1v 10.126
_pdbe_chem_comp_rdkit_properties.chi2v 4.901
_pdbe_chem_comp_rdkit_properties.chi3v 4.901
_pdbe_chem_comp_rdkit_properties.chi4v 3.135
_pdbe_chem_comp_rdkit_properties.chi0n 51.014
_pdbe_chem_comp_rdkit_properties.chi1n 26.098
_pdbe_chem_comp_rdkit_properties.chi2n 3.994
_pdbe_chem_comp_rdkit_properties.chi3n 3.994
_pdbe_chem_comp_rdkit_properties.chi4n 2.431
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.710
_pdbe_chem_comp_rdkit_properties.kappa1 6.399
_pdbe_chem_comp_rdkit_properties.kappa2 10.913
_pdbe_chem_comp_rdkit_properties.kappa3 5.928
_pdbe_chem_comp_rdkit_properties.Phi 1.995
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
Y97 UniChem PubChem 155801623
Y97 UniChem BindingDb 496856
Y97 UniChem BRENDA 271981
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
Y97 C01 -0.329 3.835 -2.611 ETKDGv3 1
Y97 C02 -1.102 3.456 -1.344 ETKDGv3 2
Y97 C04 -2.951 1.856 -0.665 ETKDGv3 3
Y97 C06 -3.038 -0.613 -0.954 ETKDGv3 4
Y97 C07 -1.545 -0.750 -0.812 ETKDGv3 5
Y97 C08 -3.836 -1.839 -1.195 ETKDGv3 6
Y97 C09 -5.169 -1.783 -1.274 ETKDGv3 7
Y97 C10 -5.877 -0.487 -1.123 ETKDGv3 8
Y97 C12 -8.169 -1.577 -1.387 ETKDGv3 9
Y97 C13 -8.306 -2.420 -0.132 ETKDGv3 10
Y97 C15 -9.649 -1.291 -1.190 ETKDGv3 11
Y97 C16 -5.155 0.629 -0.925 ETKDGv3 12
Y97 O17 -3.295 2.620 0.277 ETKDGv3 13
Y97 C18 -0.145 3.225 -0.195 ETKDGv3 14
Y97 C19 -0.090 4.084 0.836 ETKDGv3 15
Y97 C20 0.839 3.843 1.956 ETKDGv3 16
Y97 C21 1.631 2.766 1.955 ETKDGv3 17
Y97 C22 1.593 1.801 0.825 ETKDGv3 18
Y97 C23 2.484 0.613 0.847 ETKDGv3 19
Y97 C24 2.353 -0.494 0.103 ETKDGv3 20
Y97 C25 3.387 -1.523 0.351 ETKDGv3 21
Y97 C26 4.268 -1.191 1.294 ETKDGv3 22
Y97 C27 5.459 -2.005 1.687 ETKDGv3 23
Y97 C29 7.857 -2.222 1.370 ETKDGv3 24
Y97 C33 8.957 -2.197 0.316 ETKDGv3 25
Y97 N03 -1.911 2.254 -1.572 ETKDGv3 26
Y97 C05 -3.673 0.582 -0.860 ETKDGv3 27
Y97 N11 -7.314 -0.403 -1.185 ETKDGv3 28
Y97 N14 -9.728 -2.111 0.020 ETKDGv3 29
Y97 N28 6.608 -1.626 0.854 ETKDGv3 30
Y97 C30 8.458 -1.353 2.445 ETKDGv3 31
Y97 C31 9.395 -0.436 1.680 ETKDGv3 32
Y97 O32 9.649 -0.974 0.403 ETKDGv3 33
Y97 S34 3.903 0.432 1.914 ETKDGv3 34
Y97 C35 0.753 2.040 -0.202 ETKDGv3 35
Y97 H1 0.271 4.753 -2.432 ETKDGv3 36
Y97 H2 0.351 3.014 -2.923 ETKDGv3 37
Y97 H3 -1.041 4.038 -3.439 ETKDGv3 38
Y97 H4 -1.788 4.304 -1.118 ETKDGv3 39
Y97 H5 -1.046 -0.475 -1.763 ETKDGv3 40
Y97 H6 -1.267 -1.797 -0.565 ETKDGv3 41
Y97 H7 -1.170 -0.108 0.013 ETKDGv3 42
Y97 H8 -3.340 -2.796 -1.305 ETKDGv3 43
Y97 H9 -5.720 -2.697 -1.448 ETKDGv3 44
Y97 H10 -7.941 -2.147 -2.314 ETKDGv3 45
Y97 H11 -7.697 -2.053 0.727 ETKDGv3 46
Y97 H12 -8.156 -3.503 -0.336 ETKDGv3 47
Y97 H13 -9.899 -0.223 -0.994 ETKDGv3 48
Y97 H14 -10.270 -1.730 -2.001 ETKDGv3 49
Y97 H15 -5.656 1.584 -0.819 ETKDGv3 50
Y97 H16 -0.726 4.960 0.866 ETKDGv3 51
Y97 H17 0.872 4.539 2.784 ETKDGv3 52
Y97 H18 2.296 2.604 2.793 ETKDGv3 53
Y97 H19 1.558 -0.652 -0.612 ETKDGv3 54
Y97 H20 3.430 -2.456 -0.196 ETKDGv3 55
Y97 H21 5.233 -3.089 1.567 ETKDGv3 56
Y97 H22 5.665 -1.816 2.761 ETKDGv3 57
Y97 H23 7.692 -3.266 1.726 ETKDGv3 58
Y97 H24 8.560 -2.331 -0.713 ETKDGv3 59
Y97 H25 9.676 -3.024 0.507 ETKDGv3 60
Y97 H26 -1.761 1.689 -2.438 ETKDGv3 61
Y97 H27 -7.759 0.541 -1.123 ETKDGv3 62
Y97 H28 -9.842 -1.474 0.844 ETKDGv3 63
Y97 H30 6.419 -2.008 -0.102 ETKDGv3 64
Y97 H32 7.704 -0.771 3.017 ETKDGv3 65
Y97 H33 9.043 -1.983 3.151 ETKDGv3 66
Y97 H34 8.926 0.564 1.558 ETKDGv3 67
Y97 H35 10.353 -0.312 2.230 ETKDGv3 68
Y97 H36 0.722 1.380 -1.058 ETKDGv3 69
#