Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XVP    

Bonds between two atoms of the molecule

Total Number of Bonds: 104


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O50 C40 O C sing 1.43 N N
2 C40 C01 C C sing 1.51 N N
3 C38 C36 C C sing 1.53 N N
4 C38 C37 C C sing 1.53 N N
5 C01 C02 C C doub 1.38 N Y
6 C01 C06 C C sing 1.38 N Y
7 C02 C03 C C sing 1.38 N Y
8 C06 C05 C C doub 1.38 N Y
9 C11 C37 C C sing 1.53 N N
10 C11 N10 C N sing 1.47 N N
11 O14 C13 O C sing 1.43 N N
12 C37 C39 C C sing 1.53 N N
13 C12 N10 C N sing 1.46 N N
14 C12 C13 C C sing 1.53 N N
15 C03 C04 C C doub 1.38 N Y
16 C05 C04 C C sing 1.38 N Y
17 N10 S07 N S sing 1.66 N N
18 C13 C15 C C sing 1.53 N N
19 C04 S07 C S sing 1.76 N N
20 S07 O08 S O doub 1.42 N N
21 S07 O09 S O doub 1.42 N N
22 C15 C28 C C sing 1.53 N N
23 C15 N16 C N sing 1.47 N N
24 C28 C29 C C sing 1.51 N N
25 N16 C17 N C sing 1.35 N N
26 C29 C34 C C doub 1.38 N Y
27 C29 C30 C C sing 1.38 N Y
28 C17 O19 C O sing 1.35 N N
29 C17 O18 C O doub 1.21 N N
30 O19 C20 O C sing 1.45 N N
31 C34 C33 C C sing 1.38 N Y
32 O22 C21 O C sing 1.44 N N
33 O22 C24 O C sing 1.44 N N
34 C30 C31 C C doub 1.38 N Y
35 C21 C20 C C sing 1.54 N N
36 C20 C23 C C sing 1.54 N N
37 O27 C26 O C sing 1.44 N N
38 O27 C24 O C sing 1.43 N N
39 C26 C25 C C sing 1.55 N N
40 C33 C32 C C doub 1.39 N Y
41 C24 C23 C C sing 1.55 N N
42 C31 C32 C C sing 1.39 N Y
43 C25 C23 C C sing 1.55 N N
44 C32 O35 C O sing 1.36 N N
45 O35 C41 O C sing 1.43 N N
46 C41 P42 C P sing 1.82 N N
47 C47 C45 C C sing 1.53 N N
48 P42 O49 P O doub 1.48 N N
49 P42 O44 P O sing 1.61 N N
50 P42 O43 P O sing 1.61 N N
51 C45 O43 C O sing 1.43 N N
52 O44 C46 O C sing 1.43 N N
53 C48 C46 C C sing 1.53 N N
54 C13 H131 C H sing 1.09 N N
55 C15 H151 C H sing 1.09 N N
56 C20 H201 C H sing 1.09 N N
57 C21 H211 C H sing 1.09 N N
58 C21 H212 C H sing 1.09 N N
59 C24 H241 C H sing 1.09 N N
60 C26 H262 C H sing 1.09 N N
61 C26 H261 C H sing 1.09 N N
62 C28 H282 C H sing 1.09 N N
63 C28 H281 C H sing 1.09 N N
64 C02 H021 C H sing 1.08 N N
65 C03 H031 C H sing 1.08 N N
66 C05 H051 C H sing 1.08 N N
67 C06 H061 C H sing 1.08 N N
68 C11 H112 C H sing 1.09 N N
69 C11 H111 C H sing 1.09 N N
70 C12 H1 C H sing 1.09 N N
71 C12 H2 C H sing 1.09 N N
72 C23 H231 C H sing 1.09 N N
73 C25 H251 C H sing 1.09 N N
74 C25 H252 C H sing 1.09 N N
75 C30 H301 C H sing 1.08 N N
76 C31 H311 C H sing 1.08 N N
77 C33 H331 C H sing 1.08 N N
78 C34 H341 C H sing 1.08 N N
79 C36 H361 C H sing 1.09 N N
80 C36 H363 C H sing 1.09 N N
81 C36 H362 C H sing 1.09 N N
82 C37 H371 C H sing 1.09 N N
83 C38 H382 C H sing 1.09 N N
84 C38 H381 C H sing 1.09 N N
85 C39 H393 C H sing 1.09 N N
86 C39 H391 C H sing 1.09 N N
87 C39 H392 C H sing 1.09 N N
88 C40 H402 C H sing 1.09 N N
89 C40 H401 C H sing 1.09 N N
90 C41 H411 C H sing 1.09 N N
91 C41 H412 C H sing 1.09 N N
92 C45 H452 C H sing 1.09 N N
93 C45 H451 C H sing 1.09 N N
94 C46 H462 C H sing 1.09 N N
95 C46 H461 C H sing 1.09 N N
96 C47 H473 C H sing 1.09 N N
97 C47 H472 C H sing 1.09 N N
98 C47 H471 C H sing 1.09 N N
99 C48 H483 C H sing 1.09 N N
100 C48 H481 C H sing 1.09 N N
101 C48 H482 C H sing 1.09 N N
102 N16 H161 N H sing 0.97 N N
103 O14 H141 O H sing 0.97 N N
104 O50 H501 O H sing 0.97 N N