Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : XVP

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 101


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C13 C C1 R N N 0 1.617 1.12 1.271
2 C15 C C2 S N N 0 0.369 1.339 0.412
3 C17 C C3 N N N 0 -0.285 -1.008 0.476
4 C20 C C4 R N N 0 -0.921 -3.296 0.713
5 C21 C C5 N N N 0 -2.444 -3.408 0.943
6 C24 C C6 R N N 0 -1.906 -5.347 -0.182
7 C26 C C7 N N N 0 -0.691 -5.554 -2.187
8 C28 C C8 N N N 0 -0.789 1.792 1.303
9 C01 C C9 N Y N 0 7.997 1.274 -1.994
10 C02 C C10 N Y N 0 6.839 2.02 -2.103
11 C03 C C11 N Y N 0 5.956 2.084 -1.041
12 C04 C C12 N Y N 0 6.232 1.401 0.129
13 C05 C C13 N Y N 0 7.391 0.656 0.238
14 C06 C C14 N Y N 0 8.274 0.592 -0.824
15 C11 C C15 N N N 0 4.058 -0.989 1.813
16 C12 C C16 N N N 0 2.776 0.667 0.38
17 C23 C C17 S N N 0 -0.549 -4.614 0.007
18 C25 C C18 N N N 0 -0.135 -4.307 -1.455
19 C29 C C19 N Y N 0 -1.982 2.125 0.444
20 C30 C C20 N Y N 0 -2.148 3.41 -0.039
21 C31 C C21 N Y N 0 -3.24 3.718 -0.826
22 C32 C C22 N Y N 0 -4.172 2.737 -1.132
23 C33 C C23 N Y N 0 -4.004 1.448 -0.646
24 C34 C C24 N Y N 0 -2.907 1.144 0.136
25 C36 C C25 N N N 0 4.223 -4.482 0.206
26 C37 C C26 S N N 0 4.206 -2.033 0.705
27 C38 C C27 N N N 0 4.201 -3.434 1.321
28 C39 C C28 N N N 0 5.525 -1.807 -0.036
29 C40 C C29 N N N 0 8.957 1.199 -3.154
30 C41 C C30 N N N 0 -6.167 1.977 -2.179
31 C45 C C31 N N N 0 -9.207 0.028 -0.075
32 C46 C C32 N N N 0 -6.688 0.997 1.85
33 C47 C C33 N N N 0 -10.014 -1.121 -0.683
34 C48 C C34 N N N 0 -5.516 0.609 2.755
35 N10 N N1 N N N 0 3.935 0.343 1.215
36 N16 N N2 N N N 0 0.01 0.085 -0.256
37 O08 O O1 N N N 0 5.827 1.055 2.63
38 O09 O O2 N N N 0 4.464 2.747 1.395
39 O14 O O3 N N N 0 1.967 2.343 1.922
40 O18 O O4 N N N 0 -0.254 -0.953 1.689
41 O19 O O5 N N N 0 -0.615 -2.16 -0.138
42 O22 O O6 N N N 0 -2.905 -4.309 -0.083
43 O27 O O7 N N N 0 -1.915 -5.881 -1.512
44 O35 O O8 N N N 0 -5.248 3.037 -1.905
45 O43 O O9 N N N 0 -8.208 0.452 -1.005
46 O44 O O10 N N N 0 -6.21 1.221 0.522
47 O49 O O11 N N N 0 -7.925 2.867 -0.327
48 O50 O O12 N N N 0 9.912 2.257 -3.051
49 P42 P P1 N N N 0 -7.173 1.646 -0.696
50 S07 S S1 N N N 0 5.107 1.482 1.483
51 H131 H H1 N N N 0 1.413 0.355 2.02
52 H151 H H2 N N N 0 0.573 2.104 -0.336
53 H201 H H3 N N N 0 -0.396 -3.211 1.664
54 H211 H H4 N N N 0 -2.648 -3.821 1.931
55 H212 H H5 N N N 0 -2.917 -2.432 0.835
56 H241 H H6 N N N 0 -2.055 -6.125 0.567
57 H262 H H7 N N N 0 -0.876 -5.325 -3.236
58 H261 H H8 N N N 0 0.008 -6.386 -2.1
59 H282 H H9 N N N 0 -1.052 0.991 1.994
60 H281 H H10 N N N 0 -0.49 2.675 1.867
61 H021 H H11 N N N 0 6.623 2.553 -3.017
62 H031 H H12 N N N 0 5.051 2.667 -1.125
63 H051 H H13 N N N 0 7.607 0.123 1.152
64 H061 H H14 N N N 0 9.179 0.009 -0.739
65 H112 H H15 N N N 0 3.167 -1.207 2.401
66 H111 H H16 N N N 0 4.936 -1.017 2.459
67 H1 H H17 N N N 0 2.476 -0.216 -0.184
68 H2 H H18 N N N 0 3.038 1.468 -0.311
69 H231 H H19 N N N 0 0.186 -5.201 0.558
70 H251 H H20 N N N 0 0.949 -4.245 -1.551
71 H252 H H21 N N N 0 -0.613 -3.395 -1.814
72 H301 H H22 N N N 0 -1.422 4.174 0.199
73 H311 H H23 N N N 0 -3.369 4.722 -1.203
74 H331 H H24 N N N 0 -4.728 0.682 -0.883
75 H341 H H25 N N N 0 -2.773 0.14 0.511
76 H361 H H26 N N N 0 3.343 -4.359 -0.426
77 H363 H H27 N N N 0 5.123 -4.353 -0.396
78 H362 H H28 N N N 0 4.219 -5.479 0.644
79 H371 H H29 N N N 0 3.375 -1.941 0.005
80 H382 H H30 N N N 0 3.301 -3.563 1.922
81 H381 H H31 N N N 0 5.081 -3.557 1.952
82 H393 H H32 N N N 0 5.493 -0.847 -0.552
83 H391 H H33 N N N 0 6.348 -1.809 0.678
84 H392 H H34 N N N 0 5.674 -2.605 -0.764
85 H402 H H35 N N N 0 9.474 0.24 -3.137
86 H401 H H36 N N N 0 8.405 1.298 -4.089
87 H411 H H37 N N N 0 -6.819 2.265 -3.004
88 H412 H H38 N N N 0 -5.613 1.078 -2.451
89 H452 H H39 N N N 0 -9.873 0.861 0.148
90 H451 H H40 N N N 0 -8.728 -0.31 0.844
91 H462 H H41 N N N 0 -7.422 0.192 1.842
92 H461 H H42 N N N 0 -7.152 1.908 2.228
93 H473 H H43 N N N 0 -10.493 -0.783 -1.601
94 H472 H H44 N N N 0 -9.348 -1.955 -0.906
95 H471 H H45 N N N 0 -10.776 -1.445 0.027
96 H483 H H46 N N N 0 -5.052 -0.302 2.377
97 H481 H H47 N N N 0 -4.782 1.414 2.764
98 H482 H H48 N N N 0 -5.881 0.438 3.768
99 H161 H H49 N N N 0 -0.015 0.042 -1.224
100 H141 H H50 N N N 0 2.162 3.07 1.315
101 H501 H H51 N N N 0 10.563 2.27 -3.766