Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : XGC    

Bonds between two atoms of the molecule

Total Number of Bonds: 42


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C18 O17 C O sing 1.43 N N
2 O17 C14 O C sing 1.36 N N
3 C14 C15 C C doub 1.39 N Y
4 C14 N13 C N sing 1.32 N Y
5 C15 C16 C C sing 1.38 N Y
6 N13 C12 N C doub 1.32 N Y
7 C16 C11 C C doub 1.4 N Y
8 C12 C11 C C sing 1.39 N Y
9 C11 C7 C C sing 1.48 N N
10 C7 C6 C C doub 1.39 N Y
11 C7 C8 C C sing 1.39 N Y
12 C6 C5 C C sing 1.38 N Y
13 O4A S4 O S doub 1.42 N N
14 C8 C9 C C doub 1.38 N Y
15 C5 S4 C S sing 1.76 N N
16 C5 C10 C C doub 1.38 N Y
17 S4 O4B S O doub 1.42 N N
18 S4 N1 S N sing 1.66 N N
19 O1 C1 O C doub 1.21 N N
20 C9 C10 C C sing 1.38 N Y
21 C1 N1 C N sing 1.35 N N
22 C1 C2 C C sing 1.51 N N
23 C2 C3 C C sing 1.53 N N
24 C2 N2 C N sing 1.47 N N
25 C3 S3 C S sing 1.81 N N
26 C16 H1 C H sing 1.08 N N
27 C15 H2 C H sing 1.08 N N
28 C12 H3 C H sing 1.08 N N
29 C8 H4 C H sing 1.08 N N
30 C10 H5 C H sing 1.08 N N
31 C9 H6 C H sing 1.08 N N
32 C2 H7 C H sing 1.09 N N
33 C18 H8 C H sing 1.09 N N
34 C18 H9 C H sing 1.09 N N
35 C18 H10 C H sing 1.09 N N
36 C3 H11 C H sing 1.09 N N
37 C3 H12 C H sing 1.09 N N
38 C6 H13 C H sing 1.08 N N
39 N1 H14 N H sing 0.97 N N
40 N2 H15 N H sing 1.01 N N
41 N2 H16 N H sing 1.01 N N
42 S3 H18 S H sing 1.34 N N