Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : XGC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 2.497 0.389 0.02
2 C16 C C2 N Y N 0 -4.137 -0.524 -1.165
3 C15 C C3 N Y N 0 -5.173 0.365 -0.95
4 C14 C C4 N Y N 0 -5.036 1.344 0.026
5 C12 C C5 N Y N 0 -2.918 0.609 0.571
6 C5 C C6 N Y N 0 0.356 -2.077 0.032
7 C7 C C7 N Y N 0 -1.845 -1.335 -0.571
8 C8 C C8 N Y N 0 -1.919 -2.344 -1.529
9 C10 C C9 N Y N 0 0.276 -3.08 -0.916
10 C9 C C10 N Y N 0 -0.86 -3.213 -1.695
11 C2 C C11 R N N 0 3.436 1.313 -0.713
12 C11 C C12 N Y N 0 -2.983 -0.401 -0.384
13 C18 C C13 N N N 0 -5.849 3.205 1.259
14 C3 C C14 N N N 0 4.533 1.788 0.242
15 C6 C C15 N Y N 0 -0.699 -1.206 0.21
16 N1 N N1 N N N 0 2.838 -0.9 0.215
17 N13 N N2 N Y N 0 -3.93 1.434 0.748
18 N2 N N3 N N N 0 2.688 2.474 -1.215
19 O1 O O1 N N N 0 1.438 0.807 0.437
20 O17 O O2 N N N 0 -6.049 2.221 0.242
21 O4A O O3 N N N 0 1.413 -1.233 2.203
22 O4B O O4 N N N 0 2.429 -3.193 1.031
23 S3 S S1 N N N 0 5.663 2.9 -0.64
24 S4 S S2 N N N 0 1.806 -1.916 1.02
25 H1 H H1 N N N 0 -4.219 -1.298 -1.914
26 H2 H H2 N N N 0 -6.079 0.3 -1.535
27 H3 H H3 N N N 0 -2.031 0.713 1.18
28 H4 H H4 N N N 0 -2.805 -2.449 -2.138
29 H5 H H5 N N N 0 1.102 -3.762 -1.05
30 H6 H H6 N N N 0 -0.918 -3.999 -2.434
31 H7 H H7 N N N 0 3.888 0.782 -1.551
32 H8 H H8 N N N 0 -6.733 3.839 1.328
33 H9 H H9 N N N 0 -5.681 2.71 2.215
34 H10 H H10 N N N 0 -4.982 3.816 1.008
35 H11 H H11 N N N 0 4.081 2.318 1.08
36 H12 H H12 N N N 0 5.088 0.926 0.614
37 H13 H H13 N N N 0 -0.637 -0.425 0.954
38 H14 H H14 N N N 0 3.687 -1.233 -0.115
39 H15 H H15 N N N 0 1.999 2.193 -1.897
40 H16 H H16 N N N 0 2.259 2.983 -0.456
41 H18 H H18 N N N 0 6.559 3.232 0.306