Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VJT    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C17 C15 C C sing 1.53 N N
2 C18 N1 C N sing 1.47 N N
3 C18 C15 C C sing 1.53 N N
4 C16 C15 C C sing 1.53 N N
5 C15 C12 C C sing 1.51 N N
6 C12 C13 C C doub 1.38 N Y
7 C12 C11 C C sing 1.38 N Y
8 C13 C14 C C sing 1.38 N Y
9 C11 C10 C C doub 1.38 N Y
10 C14 C9 C C doub 1.4 N Y
11 C10 C9 C C sing 1.39 N Y
12 C9 C8 C C sing 1.43 N N
13 C8 C7 C C trip 1.17 N N
14 C7 C1 C C sing 1.47 N N
15 C1 O5 C O sing 1.43 N N
16 C1 C2 C C sing 1.53 N N
17 O5 C5 O C sing 1.43 N N
18 C2 O2 C O sing 1.43 N N
19 C2 C3 C C sing 1.53 N N
20 O4 C4 O C sing 1.43 N N
21 C6 C5 C C sing 1.53 N N
22 C5 C4 C C sing 1.53 N N
23 C3 C4 C C sing 1.53 N N
24 C3 O3 C O sing 1.43 N N
25 N1 H1 N H sing 1.01 N N
26 N1 H2 N H sing 1.01 N N
27 C4 H4 C H sing 1.09 N N
28 C5 H5 C H sing 1.09 N N
29 C6 H6 C H sing 1.09 N N
30 C6 H7 C H sing 1.09 N N
31 C6 H8 C H sing 1.09 N N
32 C10 H9 C H sing 1.08 N N
33 C13 H10 C H sing 1.08 N N
34 C17 H11 C H sing 1.09 N N
35 C17 H12 C H sing 1.09 N N
36 C17 H13 C H sing 1.09 N N
37 C3 H14 C H sing 1.09 N N
38 C2 H15 C H sing 1.09 N N
39 C1 H16 C H sing 1.09 N N
40 O2 H17 O H sing 0.97 N N
41 O3 H18 O H sing 0.97 N N
42 O4 H19 O H sing 0.97 N N
43 C11 H20 C H sing 1.08 N N
44 C14 H21 C H sing 1.08 N N
45 C18 H22 C H sing 1.09 N N
46 C18 H23 C H sing 1.09 N N
47 C16 H24 C H sing 1.09 N N
48 C16 H25 C H sing 1.09 N N
49 C16 H26 C H sing 1.09 N N