Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VJT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 48


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 7.58 -1.022 -0.034
2 C4 C C1 S N N 0 -5.429 0.264 -0.257
3 C5 C C2 S N N 0 -4.758 1.306 0.642
4 C6 C C3 N N N 0 -5.252 2.703 0.261
5 C7 C C4 N N N 0 -1.31 0.03 0.638
6 C8 C C5 N N N 0 -0.147 0.071 0.489
7 C10 C C6 N Y N 0 2.056 -0.998 0.589
8 C13 C C7 N Y N 0 3.248 1.335 -0.322
9 C15 C C8 N N N 0 5.513 0.275 -0.229
10 C17 C C9 N N N 0 5.831 0.587 -1.692
11 O5 O O1 N N N 0 -3.341 1.239 0.471
12 C3 C C10 R N N 0 -4.884 -1.125 0.091
13 C2 C C11 S N N 0 -3.36 -1.118 -0.065
14 C1 C C12 R N N 0 -2.769 -0.022 0.826
15 O2 O O2 N N N 0 -2.834 -2.387 0.327
16 O3 O O3 N N N 0 -5.45 -2.095 -0.792
17 O4 O O4 N N N 0 -5.145 0.56 -1.625
18 C9 C C13 N Y N 0 1.273 0.121 0.306
19 C11 C C14 N Y N 0 3.423 -0.942 0.414
20 C12 C C15 N Y N 0 4.018 0.221 -0.04
21 C14 C C16 N Y N 0 1.879 1.29 -0.157
22 C18 C C17 N N N 0 6.124 -1.075 0.15
23 C16 C C18 N N N 0 6.1 1.369 0.665
24 H1 H H1 N N N 0 8.008 -1.903 0.209
25 H8 H H8 N N N 0 -5.001 2.905 -0.78
26 H2 H H2 N N N 0 7.816 -0.754 -0.978
27 H4 H H4 N N N 0 -6.506 0.283 -0.095
28 H5 H H5 N N N 0 -5.008 1.103 1.683
29 H6 H H6 N N N 0 -6.333 2.753 0.39
30 H7 H H7 N N N 0 -4.774 3.444 0.9
31 H9 H H9 N N N 0 1.593 -1.906 0.947
32 H10 H H10 N N N 0 3.718 2.239 -0.68
33 H11 H H11 N N N 0 5.396 1.55 -1.962
34 H12 H H12 N N N 0 6.912 0.627 -1.829
35 H13 H H13 N N N 0 5.413 -0.192 -2.329
36 H14 H H14 N N N 0 -5.145 -1.372 1.12
37 H15 H H15 N N N 0 -3.101 -0.921 -1.105
38 H16 H H16 N N N 0 -2.994 -0.242 1.87
39 H17 H H17 N N N 0 -1.872 -2.454 0.253
40 H18 H H18 N N N 0 -5.148 -3.0 -0.629
41 H19 H H19 N N N 0 -5.461 1.428 -1.913
42 H20 H H20 N N N 0 4.031 -1.808 0.632
43 H21 H H21 N N N 0 1.278 2.16 -0.376
44 H22 H H22 N N N 0 5.705 -1.854 -0.487
45 H23 H H23 N N N 0 5.897 -1.297 1.192
46 H24 H H24 N N N 0 5.873 1.147 1.708
47 H25 H H25 N N N 0 7.181 1.409 0.529
48 H26 H H26 N N N 0 5.665 2.332 0.396