Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VG1    

Bonds between two atoms of the molecule

Total Number of Bonds: 33


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C1 O1 C O sing 1.43 N N
3 C1 O5 C O sing 1.43 N N
4 C1 H1 C H sing 1.09 N N
5 C2 C3 C C sing 1.53 N N
6 C2 O2 C O sing 1.43 N N
7 C2 H2 C H sing 1.09 N N
8 C3 C4 C C sing 1.53 N N
9 C3 O3 C O sing 1.43 N N
10 C3 H3 C H sing 1.09 N N
11 C4 C5 C C sing 1.53 N N
12 C4 O4 C O sing 1.43 N N
13 C4 H4 C H sing 1.09 N N
14 C5 C6 C C sing 1.53 N N
15 C5 O5 C O sing 1.43 N N
16 C5 H5 C H sing 1.09 N N
17 C6 O6 C O sing 1.43 N N
18 C6 H61 C H sing 1.09 N N
19 C6 H62 C H sing 1.09 N N
20 O1 P O P sing 1.61 N N
21 O2 HO2 O H sing 0.97 N N
22 O3 HO3 O H sing 0.97 N N
23 O4 HO4 O H sing 0.97 N N
24 O6 V O V sing 1.84 N N
25 P OP1 P O sing 1.61 N N
26 P OP2 P O sing 1.61 N N
27 P OP3 P O doub 1.48 N N
28 OP1 HOP1 O H sing 0.97 N N
29 OP2 HOP2 O H sing 0.97 N N
30 V OV1 V O sing 1.84 N N
31 V OV2 V O doub 1.58 N N
32 V OV3 V O doub 1.58 N N
33 OV1 HTV O H sing 0.97 N N