Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : VG1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 33


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 R N N 0 -0.008 -0.798 2.057
2 C2 C C2 R N N 0 1.327 -0.844 2.802
3 C3 C C3 S N N 0 2.231 0.277 2.277
4 C4 C C4 S N N 0 2.326 0.161 0.752
5 C5 C C5 R N N 0 0.913 0.133 0.164
6 C6 C C6 N N N 0 0.998 0.05 -1.36
7 O1 O O1 N N N 0 -0.618 0.477 2.264
8 O2 O O2 N N N 0 1.1 -0.669 4.202
9 O3 O O3 N N N 0 3.534 0.151 2.85
10 O4 O O4 N N N 0 3.04 1.283 0.231
11 O5 O O5 N N N 0 0.205 -1.0 0.661
12 O6 O O6 N N N 0 -0.32 0.024 -1.91
13 P P P N N N 0 -2.211 0.244 2.211
14 OP1 O OP1 N N N 0 -2.965 1.648 2.439
15 OP2 O OP2 N N N 0 -2.618 -0.357 0.775
16 OP3 O OP3 N N N 0 -2.606 -0.705 3.275
17 V V V N N N 0 -0.133 -0.074 -3.737
18 OV1 O OV1 N N N 0 -1.796 -0.112 -4.523
19 OV2 O OV2 N N N 0 0.666 1.189 -4.256
20 OV3 O OV3 N N N 0 0.658 -1.392 -4.116
21 H1 H H1 N N N 0 -0.664 -1.58 2.44
22 H2 H H2 N N N 0 1.809 -1.807 2.628
23 H61 H H61 N N N 0 1.533 0.919 -1.742
24 H3 H H3 N N N 0 1.805 1.244 2.545
25 H4 H H4 N N N 0 2.848 -0.758 0.488
26 H5 H H5 N N N 0 0.385 1.043 0.449
27 H62 H H62 N N N 0 1.528 -0.857 -1.646
28 HO2 H HO2 N N N 0 0.525 -1.393 4.485
29 HO3 H HO3 N N N 0 3.426 0.224 3.808
30 HO4 H HO4 N N N 0 3.92 1.265 0.631
31 HOP1 H HOP1 N N N 0 -3.914 1.465 2.4
32 HOP2 H HOP2 N N N 0 -2.344 0.291 0.112
33 HTV H HTV N N N 0 -1.653 -0.164 -5.478