Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : V9W    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C10 C13 C C doub 1.39 N Y
2 C10 C09 C C sing 1.38 N Y
3 C13 C12 C C sing 1.4 N Y
4 C13 N14 C N sing 1.38 N Y
5 C15 C16 C C sing 1.51 N N
6 C15 N14 C N sing 1.36 N Y
7 C15 N38 C N doub 1.3 N Y
8 C17 C21 C C sing 1.53 N N
9 C17 C16 C C sing 1.53 N N
10 C17 C18 C C sing 1.53 N N
11 C17 O37 C O sing 1.43 N N
12 C20 C19 C C sing 1.53 N N
13 C20 N22 C N sing 1.47 N N
14 C21 N22 C N sing 1.47 N N
15 C01 C02 C C sing 1.53 N N
16 C02 C03 C C sing 1.53 N N
17 C02 C04 C C sing 1.53 N N
18 C02 C40 C C sing 1.53 N N
19 C04 C05 C C sing 1.53 N N
20 C05 N06 C N sing 1.47 N N
21 C07 C08 C C sing 1.51 N N
22 C07 N06 C N sing 1.47 N N
23 C08 C09 C C doub 1.39 N Y
24 C08 C11 C C sing 1.37 N Y
25 C11 C12 C C doub 1.4 N Y
26 C12 N38 C N sing 1.36 N Y
27 C18 C19 C C sing 1.53 N N
28 C23 C36 C C doub 1.39 N Y
29 C23 N22 C N sing 1.39 N N
30 C23 N24 C N sing 1.33 N Y
31 C25 N24 C N doub 1.32 N Y
32 C25 N26 C N sing 1.32 N Y
33 C27 C36 C C sing 1.39 N Y
34 C27 N26 C N doub 1.33 N Y
35 C27 N28 C N sing 1.39 N N
36 C29 N28 C N sing 1.47 N N
37 C30 C31 C C doub 1.38 N Y
38 C30 C35 C C sing 1.38 N Y
39 C31 C32 C C sing 1.38 N Y
40 C32 C33 C C doub 1.38 N Y
41 C33 C34 C C sing 1.38 N Y
42 C34 C35 C C doub 1.38 N Y
43 C39 C40 C C sing 1.53 N N
44 C39 N06 C N sing 1.47 N N
45 C29 C30 C C sing 1.51 N N
46 C10 H1 C H sing 1.08 N N
47 C20 H2 C H sing 1.09 N N
48 C20 H3 C H sing 1.09 N N
49 C21 H4 C H sing 1.09 N N
50 C21 H5 C H sing 1.09 N N
51 C01 H6 C H sing 1.09 N N
52 C01 H7 C H sing 1.09 N N
53 C01 H8 C H sing 1.09 N N
54 C03 H9 C H sing 1.09 N N
55 C03 H10 C H sing 1.09 N N
56 C03 H11 C H sing 1.09 N N
57 C04 H12 C H sing 1.09 N N
58 C04 H13 C H sing 1.09 N N
59 C05 H14 C H sing 1.09 N N
60 C05 H15 C H sing 1.09 N N
61 C07 H16 C H sing 1.09 N N
62 C07 H17 C H sing 1.09 N N
63 C09 H18 C H sing 1.08 N N
64 C11 H19 C H sing 1.08 N N
65 C16 H20 C H sing 1.09 N N
66 C16 H21 C H sing 1.09 N N
67 C18 H22 C H sing 1.09 N N
68 C18 H23 C H sing 1.09 N N
69 C19 H24 C H sing 1.09 N N
70 C19 H25 C H sing 1.09 N N
71 C25 H26 C H sing 1.08 N N
72 C29 H27 C H sing 1.09 N N
73 C29 H28 C H sing 1.09 N N
74 C31 H29 C H sing 1.08 N N
75 C32 H30 C H sing 1.08 N N
76 C33 H31 C H sing 1.08 N N
77 C34 H32 C H sing 1.08 N N
78 C35 H33 C H sing 1.08 N N
79 C36 H34 C H sing 1.08 N N
80 C39 H35 C H sing 1.09 N N
81 C39 H36 C H sing 1.09 N N
82 C40 H37 C H sing 1.09 N N
83 C40 H38 C H sing 1.09 N N
84 N14 H40 N H sing 0.97 N N
85 N28 H41 N H sing 0.97 N N
86 O37 H43 O H sing 0.97 N N