Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V9W

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 81


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 4.93 -1.688 1.866
2 C13 C C2 N Y N 0 3.763 -1.553 1.127
3 C15 C C3 N Y N 0 1.821 -1.682 0.084
4 C17 C C4 R N N 0 -0.603 -1.184 -0.069
5 C20 C C5 N N N 0 -3.053 -0.535 1.333
6 C21 C C6 N N N 0 -1.968 -1.761 -0.454
7 C01 C C7 N N N 0 11.071 0.828 -2.423
8 C02 C C8 N N N 0 10.228 1.068 -1.17
9 C03 C C9 N N N 0 11.148 1.236 0.041
10 C04 C C10 N N N 0 9.388 2.335 -1.353
11 C05 C C11 N N N 0 8.502 2.536 -0.122
12 C07 C C12 N N N 0 6.667 1.585 1.14
13 C08 C C13 N Y N 0 5.638 0.484 1.13
14 C09 C C14 N Y N 0 5.861 -0.671 1.864
15 C11 C C15 N Y N 0 4.495 0.635 0.396
16 C12 C C16 N Y N 0 3.538 -0.383 0.383
17 C16 C C17 N N N 0 0.493 -2.198 -0.406
18 C18 C C18 N N N 0 -0.583 -0.891 1.433
19 C19 C C19 N N N 0 -1.72 0.078 1.771
20 C23 C C20 N Y N 0 -4.258 -1.231 -0.564
21 C25 C C21 N Y N 0 -5.544 -2.814 -1.636
22 C27 C C22 N Y N 0 -6.615 -0.942 -0.824
23 C29 C C23 N N N 0 -7.734 1.071 0.067
24 C30 C C24 N Y N 0 -9.122 1.654 0.137
25 C31 C C25 N Y N 0 -9.942 1.359 1.21
26 C32 C C26 N Y N 0 -11.215 1.893 1.275
27 C33 C C27 N Y N 0 -11.668 2.724 0.267
28 C34 C C28 N Y N 0 -10.848 3.02 -0.806
29 C35 C C29 N Y N 0 -9.573 2.489 -0.868
30 C36 C C30 N Y N 0 -5.398 -0.462 -0.35
31 C39 C C31 N N N 0 8.413 0.146 0.276
32 C40 C C32 N N N 0 9.297 -0.126 -0.943
33 N06 N N1 N N N 0 7.628 1.368 0.05
34 N14 N N2 N Y N 0 2.659 -2.356 0.917
35 N22 N N3 N N N 0 -3.022 -0.797 -0.111
36 N24 N N4 N Y N 0 -4.373 -2.392 -1.207
37 N26 N N5 N Y N 0 -6.646 -2.116 -1.452
38 N28 N N6 N N N 0 -7.779 -0.214 -0.636
39 N38 N N7 N Y N 0 2.334 -0.528 -0.229
40 O37 O O1 N N N 0 -0.374 0.025 -0.796
41 H1 H H1 N N N 0 5.106 -2.584 2.443
42 H2 H H2 N N N 0 -3.215 -1.471 1.869
43 H3 H H3 N N N 0 -3.863 0.158 1.559
44 H4 H H4 N N N 0 -1.99 -1.958 -1.525
45 H5 H H5 N N N 0 -2.135 -2.691 0.09
46 H6 H H6 N N N 0 11.668 -0.075 -2.293
47 H7 H H7 N N N 0 10.415 0.709 -3.286
48 H8 H H8 N N N 0 11.733 1.679 -2.585
49 H9 H H9 N N N 0 11.809 2.087 -0.12
50 H10 H H10 N N N 0 10.546 1.406 0.934
51 H11 H H11 N N N 0 11.744 0.333 0.172
52 H12 H H12 N N N 0 10.047 3.195 -1.472
53 H13 H H13 N N N 0 8.761 2.231 -2.239
54 H14 H H14 N N N 0 9.129 2.654 0.762
55 H15 H H15 N N N 0 7.891 3.429 -0.255
56 H16 H H16 N N N 0 6.173 2.547 1.002
57 H17 H H17 N N N 0 7.194 1.581 2.095
58 H18 H H18 N N N 0 6.769 -0.774 2.439
59 H19 H H19 N N N 0 4.332 1.538 -0.173
60 H20 H H20 N N N 0 0.535 -2.342 -1.486
61 H21 H H21 N N N 0 0.27 -3.148 0.079
62 H22 H H22 N N N 0 -0.719 -1.819 1.988
63 H23 H H23 N N N 0 0.371 -0.44 1.704
64 H24 H H24 N N N 0 -1.564 1.02 1.247
65 H25 H H25 N N N 0 -1.738 0.257 2.846
66 H26 H H26 N N N 0 -5.603 -3.76 -2.153
67 H27 H H27 N N N 0 -7.079 1.756 -0.471
68 H28 H H28 N N N 0 -7.352 0.92 1.077
69 H29 H H29 N N N 0 -9.588 0.71 1.998
70 H30 H H30 N N N 0 -11.856 1.662 2.113
71 H31 H H31 N N N 0 -12.663 3.141 0.317
72 H32 H H32 N N N 0 -11.202 3.668 -1.593
73 H33 H H33 N N N 0 -8.931 2.723 -1.704
74 H34 H H34 N N N 0 -5.339 0.482 0.171
75 H35 H H35 N N N 0 7.739 -0.696 0.432
76 H36 H H36 N N N 0 9.041 0.276 1.158
77 H37 H H37 N N N 0 8.669 -0.27 -1.823
78 H38 H H38 N N N 0 9.891 -1.023 -0.769
79 H40 H H40 N N N 0 2.509 -3.237 1.294
80 H41 H H41 N N N 0 -8.624 -0.555 -0.969
81 H43 H H43 N N N 0 0.474 0.446 -0.601