Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : V1C    

Bonds between two atoms of the molecule

Total Number of Bonds: 43


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C4 N5 C N sing 1.47 N N
2 C4 C3 C C sing 1.53 N N
3 C1 C3 C C sing 1.53 N N
4 C8 N5 C N sing 1.35 N Y
5 C8 C9 C C doub 1.36 N Y
6 N5 N6 N N sing 1.4 N Y
7 CE2 CD1 C C doub 1.38 N Y
8 CE2 CZ C C sing 1.39 N Y
9 C3 C2 C C sing 1.53 N N
10 CD1 CG C C sing 1.38 N Y
11 C9 CZ C C sing 1.49 N N
12 C9 C7 C C sing 1.41 N Y
13 N6 C7 N C doub 1.31 N Y
14 CZ CE1 C C doub 1.39 N Y
15 CG CB C C sing 1.51 N N
16 CG CD2 C C doub 1.38 N Y
17 CA CB C C sing 1.53 N N
18 CA C C C sing 1.51 N N
19 CA N C N sing 1.47 N N
20 CE1 CD2 C C sing 1.38 N Y
21 C O C O doub 1.21 N N
22 N H N H sing 1.01 N N
23 N H2 N H sing 1.01 N N
24 CA HA C H sing 1.09 N N
25 CB H6 C H sing 1.09 N N
26 CB H7 C H sing 1.09 N N
27 CD1 H8 C H sing 1.08 N N
28 CD2 H9 C H sing 1.08 N N
29 CE1 H10 C H sing 1.08 N N
30 CE2 H11 C H sing 1.08 N N
31 C8 H12 C H sing 1.08 N N
32 C7 H13 C H sing 1.08 N N
33 C4 H14 C H sing 1.09 N N
34 C4 H15 C H sing 1.09 N N
35 C3 H16 C H sing 1.09 N N
36 C2 H17 C H sing 1.09 N N
37 C2 H18 C H sing 1.09 N N
38 C2 H19 C H sing 1.09 N N
39 C1 H20 C H sing 1.09 N N
40 C1 H21 C H sing 1.09 N N
41 C1 H22 C H sing 1.09 N N
42 C OXT C O sing 1.34 N N
43 OXT HXT O H sing 0.97 N N