Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : V1C

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N N N N N N 0 -4.262 -1.005 1.385
2 CA C CA S N N 0 -4.518 0.211 0.601
3 C C C N N N 0 -6.004 0.44 0.5
4 O O O N N N 0 -6.771 -0.474 0.693
5 CB C CB N N N 0 -3.931 0.045 -0.803
6 CG C CG N Y N 0 -2.431 -0.062 -0.71
7 CD1 C CD1 N Y N 0 -1.654 1.082 -0.765
8 CD2 C CD2 N Y N 0 -1.836 -1.302 -0.565
9 CE1 C CE1 N Y N 0 -0.462 -1.405 -0.48
10 CZ C CZ N Y N 0 0.325 -0.257 -0.54
11 CE2 C CE2 N Y N 0 -0.28 0.99 -0.68
12 C9 C C9 N Y N 0 1.804 -0.362 -0.448
13 C8 C C8 N Y N 0 2.689 0.675 -0.487
14 C7 C C7 N Y N 0 2.546 -1.549 -0.299
15 N6 N N6 N Y N 0 3.813 -1.233 -0.257
16 N5 N N5 N Y N 0 3.929 0.157 -0.374
17 C4 C C4 N N N 0 5.181 0.919 -0.369
18 C3 C C3 N N N 0 5.978 0.581 0.892
19 C2 C C2 N N N 0 6.399 -0.89 0.851
20 C1 C C1 N N N 0 7.224 1.466 0.961
21 H H H N N N 0 -4.685 -1.811 0.951
22 H2 H H2 N N Y 0 -3.273 -1.145 1.522
23 HA H H4 N N N 0 -4.051 1.065 1.091
24 H6 H H6 N N N 0 -4.332 -0.86 -1.26
25 H7 H H7 N N N 0 -4.198 0.909 -1.412
26 H8 H H8 N N N 0 -2.124 2.048 -0.874
27 H9 H H9 N N N 0 -2.447 -2.191 -0.518
28 H10 H H10 N N N 0 0.002 -2.373 -0.366
29 H11 H H11 N N N 0 0.326 1.883 -0.723
30 H12 H H12 N N N 0 2.442 1.722 -0.59
31 H13 H H13 N N N 0 2.139 -2.547 -0.231
32 H14 H H14 N N N 0 5.767 0.659 -1.25
33 H15 H H15 N N N 0 4.957 1.985 -0.382
34 H16 H H16 N N N 0 5.359 0.757 1.772
35 H17 H H17 N N N 0 7.018 -1.066 -0.029
36 H18 H H18 N N N 0 6.967 -1.131 1.749
37 H19 H H19 N N N 0 5.511 -1.521 0.802
38 H20 H H20 N N N 0 6.924 2.513 0.99
39 H21 H H21 N N N 0 7.792 1.225 1.859
40 H22 H H22 N N N 0 7.843 1.29 0.081
41 OXT O OXT N N Y 0 -6.476 1.659 0.195
42 HXT H HXT N N Y 0 -7.437 1.757 0.141