Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UPC    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1' N1 C N sing 1.46 N N
2 N1 C6 N C sing 1.37 N N
3 N1 C2 N C sing 1.35 N N
4 O2 C2 O C doub 1.22 N N
5 C2 N3 C N sing 1.35 N N
6 N3 C4 N C sing 1.35 N N
7 C5 C4 C C sing 1.42 N N
8 C4 O4 C O doub 1.22 N N
9 C6 C5 C C doub 1.35 N N
10 C5 H5 C H sing 1.08 N N
11 C6 H6 C H sing 1.08 N N
12 O2A PA O P doub 1.48 N N
13 PA C3A P C sing 1.82 N N
14 PA O5' P O sing 1.61 N N
15 PA O1A P O sing 1.61 N N
16 O2B PB O P doub 1.48 N N
17 O3B PB O P sing 1.61 N N
18 PB O1B P O sing 1.61 N N
19 PB C3A P C sing 1.82 N N
20 O2G PG O P doub 1.48 N N
21 O1G PG O P sing 1.61 N N
22 PG O3B P O sing 1.61 N N
23 PG O3G P O sing 1.61 N N
24 O4' C1' O C sing 1.44 N N
25 C2' C1' C C sing 1.54 N N
26 C1' H1' C H sing 1.09 N N
27 O1A HO1A O H sing 0.97 N N
28 O1B HO1B O H sing 0.97 N N
29 O1G HO1G O H sing 0.97 N N
30 C3' C2' C C sing 1.55 N N
31 C2' H2' C H sing 1.09 N N
32 C2' H2'A C H sing 1.09 N N
33 O3' C3' O C sing 1.43 N N
34 C4' C3' C C sing 1.55 N N
35 C3' H3' C H sing 1.09 N N
36 O3' HO3' O H sing 0.97 N N
37 C3A H3A C H sing 1.09 N N
38 C3A H3AA C H sing 1.09 N N
39 O3G HO3G O H sing 0.97 N N
40 C5' C4' C C sing 1.53 N N
41 C4' O4' C O sing 1.45 N N
42 C4' H4' C H sing 1.09 N N
43 C5' O5' C O sing 1.43 N N
44 C5' H5' C H sing 1.09 N N
45 C5' H5'A C H sing 1.09 N N
46 N3 HN3 N H sing 0.97 N N