Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : UPC

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 5.184 -0.648 0.717
2 C2 C C2 N N N 0 5.215 -0.822 -0.617
3 O2 O O2 N N N 0 4.586 -0.07 -1.335
4 N3 N N3 N N N 0 5.934 -1.818 -1.168
5 C4 C C4 N N N 0 6.637 -2.662 -0.386
6 O4 O O4 N N N 0 7.288 -3.563 -0.883
7 C5 C C5 N N N 0 6.613 -2.49 1.019
8 C6 C C6 N N N 0 5.884 -1.482 1.545
9 PA P PA N N N 0 -1.173 1.129 -0.45
10 PB P PB N N N 0 -3.947 0.063 -0.266
11 PG P PG N N N 0 -6.51 -1.228 0.473
12 C1' C C1' R N N 0 4.398 0.449 1.287
13 O1A O O1A N N N 0 -1.758 2.611 -0.682
14 O1B O O1B N N N 0 -3.76 -0.669 -1.688
15 O1G O O1G N N N 0 -7.468 0.04 0.732
16 C2' C C2' N N N 0 4.983 1.802 0.837
17 O2A O O2A N N N 0 -1.001 0.456 -1.757
18 O2B O O2B N N N 0 -4.484 1.425 -0.479
19 O2G O O2G N N N 0 -6.728 -1.738 -0.9
20 C3' C C3' S N N 0 3.81 2.498 0.105
21 O3' O O3' N N N 0 3.756 3.887 0.434
22 C3A C C3A N N N 0 -2.335 0.171 0.578
23 O3B O O3B N N N 0 -4.973 -0.783 0.642
24 O3G O O3G N N N 0 -6.854 -2.386 1.537
25 C4' C C4' R N N 0 2.58 1.746 0.674
26 O4' O O4' N N N 0 3.045 0.383 0.804
27 C5' C C5' N N N 0 1.403 1.822 -0.301
28 O5' O O5' N N N 0 0.25 1.224 0.296
29 H5 H H5 N N N 0 7.17 -3.156 1.662
30 H6 H H6 N N N 0 5.854 -1.335 2.615
31 H1' H H1' N N N 0 4.407 0.384 2.375
32 HO1A H HO1A N N N 0 -1.896 3.111 0.134
33 HO1B H HO1B N N N 0 -3.41 -1.568 -1.625
34 HO1G H HO1G N N N 0 -7.378 0.427 1.614
35 H2' H H2' N N N 0 5.295 2.388 1.701
36 H2'A H H2'A N N N 0 5.822 1.648 0.158
37 H3' H H3' N N N 0 3.887 2.358 -0.974
38 HO3' H HO3' N N N 0 4.545 4.383 0.177
39 H3A H H3A N N N 0 -1.939 -0.832 0.735
40 H3AA H H3AA N N N 0 -2.461 0.666 1.541
41 HO3G H HO3G N N N 0 -7.766 -2.704 1.492
42 H4' H H4' N N N 0 2.3 2.148 1.647
43 H5' H H5' N N N 0 1.191 2.866 -0.534
44 H5'A H H5'A N N N 0 1.655 1.29 -1.218
45 HN3 H HN3 N N N 0 5.945 -1.93 -2.131