Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TRH    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O4P P2 O P sing 1.61 N N
2 O4P H4PO O H sing 0.97 N N
3 P2 O3P P O doub 1.48 N N
4 P2 O1 P O sing 1.61 N N
5 P2 OPP P O sing 1.61 N N
6 O1 C1 O C sing 1.43 N N
7 C1 C2 C C sing 1.53 N N
8 C1 O5 C O sing 1.43 N N
9 C1 HC1 C H sing 1.09 N N
10 C2 O2 C O sing 1.43 N N
11 C2 C3 C C sing 1.53 N N
12 C2 HC2 C H sing 1.09 N N
13 O2 HO2 O H sing 0.97 N N
14 C3 O3 C O sing 1.43 N N
15 C3 C4 C C sing 1.53 N N
16 C3 HC3 C H sing 1.09 N N
17 O3 HO3 O H sing 0.97 N N
18 C4 O4 C O sing 1.43 N N
19 C4 C5 C C sing 1.53 N N
20 C4 HC4 C H sing 1.09 N N
21 O4 HO4 O H sing 0.97 N N
22 C5 O5 C O sing 1.43 N N
23 C5 C6 C C sing 1.53 N N
24 C5 HC5 C H sing 1.09 N N
25 C6 HC61 C H sing 1.09 N N
26 C6 HC62 C H sing 1.09 N N
27 C6 HC63 C H sing 1.09 N N
28 OPP P O P sing 1.61 N N
29 P O1P P O sing 1.61 N N
30 P O2P P O doub 1.48 N N
31 P O5' P O sing 1.61 N N
32 O1P H1PO O H sing 0.97 N N
33 O5' C5' O C sing 1.43 N N
34 C5' C4' C C sing 1.53 N N
35 C5' H5'1 C H sing 1.09 N N
36 C5' H5'2 C H sing 1.09 N N
37 C4' O4' C O sing 1.44 N N
38 C4' C3' C C sing 1.55 N N
39 C4' H4'C C H sing 1.09 N N
40 O4' C1' O C sing 1.44 N N
41 C3' O3' C O sing 1.43 N N
42 C3' C2' C C sing 1.55 N N
43 C3' H3'C C H sing 1.09 N N
44 O3' H3'O O H sing 0.97 N N
45 C2' C1' C C sing 1.54 N N
46 C2' H2'1 C H sing 1.09 N N
47 C2' H2'2 C H sing 1.09 N N
48 C1' N11 C N sing 1.46 N N
49 C1' H1'C C H sing 1.09 N N
50 N11 C21 N C sing 1.35 N N
51 N11 C61 N C sing 1.37 N N
52 C21 O21 C O doub 1.22 N N
53 C21 N31 C N sing 1.35 N N
54 N31 C41 N C sing 1.35 N N
55 N31 H31N N H sing 0.97 N N
56 C41 O41 C O doub 1.22 N N
57 C41 C51 C C sing 1.42 N N
58 C51 C5A C C sing 1.51 N N
59 C51 C61 C C doub 1.35 N N
60 C5A HCA1 C H sing 1.09 N N
61 C5A HCA2 C H sing 1.09 N N
62 C5A HCA3 C H sing 1.09 N N
63 C61 H61C C H sing 1.08 N N