Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TRH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 61


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O4P O O4P N N N 0 0.5 1.102 -2.566
2 P2 P P2 S N N 0 -0.506 -0.139 -2.753
3 O3P O O3P N N N 0 -1.839 0.361 -3.155
4 O1 O O1 N N N 0 0.063 -1.124 -3.892
5 C1 C C1 R N N 0 0.151 -0.358 -5.095
6 C2 C C2 R N N 0 -0.061 -1.277 -6.3
7 O2 O O2 N N N 0 0.961 -2.275 -6.326
8 C3 C C3 R N N 0 0.002 -0.442 -7.583
9 O3 O O3 N N N 0 -0.046 -1.306 -8.72
10 C4 C C4 R N N 0 1.315 0.347 -7.588
11 O4 O O4 N N N 0 1.33 1.244 -8.701
12 C5 C C5 S N N 0 1.423 1.145 -6.287
13 O5 O O5 N N N 0 1.437 0.253 -5.174
14 C6 C C6 N N N 0 2.714 1.965 -6.298
15 OPP O OPP N N N 0 -0.631 -0.942 -1.363
16 P P P S N N 0 -1.203 0.097 -0.275
17 O1P O O1P N N N 0 -2.642 0.638 -0.754
18 O2P O O2P N N N 0 -0.267 1.235 -0.141
19 O5' O O5' N N N 0 -1.354 -0.642 1.146
20 C5' C C5' N N N 0 -1.863 0.326 2.064
21 C4' C C4' R N N 0 -2.031 -0.315 3.443
22 O4' O O4' N N N 0 -0.753 -0.729 3.97
23 C3' C C3' S N N 0 -2.531 0.728 4.474
24 O3' O O3' N N N 0 -3.956 0.827 4.459
25 C2' C C2' N N N 0 -2.032 0.125 5.811
26 C1' C C1' R N N 0 -0.901 -0.835 5.396
27 N11 N N11 N N N 0 0.348 -0.453 6.057
28 C21 C C21 N N N 0 0.865 0.771 5.847
29 O21 O O21 N N N 0 0.286 1.549 5.115
30 N31 N N31 N N N 0 2.01 1.15 6.445
31 C41 C C41 N N N 0 2.665 0.299 7.261
32 O41 O O41 N N N 0 3.703 0.639 7.798
33 C51 C C51 N N N 0 2.135 -0.994 7.485
34 C5A C C5A N N N 0 2.847 -1.964 8.392
35 C61 C C61 N N N 0 0.982 -1.346 6.877
36 H4PO H OH4P N N N 0 1.355 0.733 -2.305
37 HC1 H HC1 N N N 0 -0.617 0.414 -5.089
38 HC2 H HC2 N N N 0 -1.036 -1.757 -6.224
39 HO2 H HO2 N N N 0 0.889 -2.771 -5.499
40 HC3 H HC3 N N N 0 -0.841 0.248 -7.612
41 HO3 H HO3 N N N 0 -0.881 -1.79 -8.668
42 HC4 H HC4 N N N 0 2.156 -0.342 -7.665
43 HO4 H HO4 N N N 0 2.171 1.719 -8.666
44 HC5 H HC5 N N N 0 0.568 1.816 -6.202
45 HC61 H 1HC6 N N N 0 2.791 2.535 -5.372
46 HC62 H 2HC6 N N N 0 3.57 1.294 -6.383
47 HC63 H 3HC6 N N N 0 2.703 2.649 -7.146
48 H1PO H OH1P N N N 0 -3.22 -0.133 -0.829
49 H5'1 H 1H5' N N N 0 -1.165 1.161 2.135
50 H5'2 H 2H5' N N N 0 -2.829 0.689 1.712
51 H4'C H CH4' N N N 0 -2.717 -1.16 3.39
52 H3'C H CH3' N N N 0 -2.073 1.701 4.291
53 H3'O H OH3' N N N 0 -4.203 1.42 5.181
54 H2'1 H 1H2' N N N 0 -2.836 -0.422 6.303
55 H2'2 H 2H2' N N N 0 -1.647 0.908 6.465
56 H1'C H CH1' N N N 0 -1.165 -1.857 5.666
57 H31N H NH31 N N N 0 2.367 2.038 6.286
58 HCA1 H 1HCA N N N 0 3.751 -1.498 8.784
59 HCA2 H 2HCA N N N 0 2.191 -2.239 9.218
60 HCA3 H 3HCA N N N 0 3.115 -2.858 7.828
61 H61C H CH61 N N N 0 0.562 -2.328 7.036