Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : TPS    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CM2 C2A C C sing 1.51 N N
2 CM2 HM21 C H sing 1.09 N N
3 CM2 HM22 C H sing 1.09 N N
4 CM2 HM23 C H sing 1.09 N N
5 N3 C2 N C doub 1.29 N Y
6 N3 C4 N C sing 1.32 N Y
7 N3 C7A N C sing 1.46 N N
8 C2 S1 C S sing 1.71 N Y
9 C2 H2 C H sing 1.08 N N
10 S1 C5 S C sing 1.76 N Y
11 C5 C4 C C doub 1.34 N Y
12 C5 C6 C C sing 1.51 N N
13 C4 CM4 C C sing 1.51 N N
14 CM4 HM41 C H sing 1.09 N N
15 CM4 HM42 C H sing 1.09 N N
16 CM4 HM43 C H sing 1.09 N N
17 C6 C7 C C sing 1.53 N N
18 C6 H61 C H sing 1.09 N N
19 C6 H62 C H sing 1.09 N N
20 C7 O7 C O sing 1.43 N N
21 C7 H71 C H sing 1.09 N N
22 C7 H72 C H sing 1.09 N N
23 O7 P1 O P sing 1.61 N N
24 N1A C2A N C doub 1.32 N Y
25 N1A C6A N C sing 1.33 N Y
26 C2A N3A C N sing 1.32 N Y
27 N3A C4A N C doub 1.33 N Y
28 C4A N4A C N sing 1.38 N N
29 C4A C5A C C sing 1.4 N Y
30 N4A H41N N H sing 0.97 N N
31 N4A H42N N H sing 0.97 N N
32 C5A C6A C C doub 1.38 N Y
33 C5A C7A C C sing 1.51 N N
34 C6A H6A C H sing 1.08 N N
35 C7A H7A1 C H sing 1.09 N N
36 C7A H7A2 C H sing 1.09 N N
37 P1 O1 P O doub 1.48 N N
38 P1 O2 P O sing 1.61 N N
39 P1 O3 P O sing 1.61 N N
40 O2 HO2 O H sing 0.97 N N
41 O3 HO3 O H sing 0.97 N N