Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : TPS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CM2 C CM2 N N N 0 6.64 1.925 1.411
2 N3 N N3 N Y N 1 1.37 -0.86 -0.733
3 C2 C C2 N Y N 0 1.362 -2.067 -0.278
4 S1 S S1 N Y N 0 0.015 -2.302 0.748
5 C5 C C5 N Y N 0 -0.491 -0.635 0.48
6 C4 C C4 N Y N 0 0.392 -0.066 -0.347
7 CM4 C CM4 N N N 0 0.278 1.367 -0.8
8 C6 C C6 N N N 0 -1.704 0.03 1.077
9 C7 C C7 N N N 0 -2.903 -0.166 0.147
10 O7 O O7 N N N 0 -4.053 0.465 0.712
11 N1A N N1A N Y N 0 4.613 2.09 0.071
12 C2A C C2A N Y N 0 5.526 1.307 0.606
13 N3A N N3A N Y N 0 5.493 -0.002 0.458
14 C4A C C4A N Y N 0 4.525 -0.581 -0.247
15 N4A N N4A N N N 0 4.494 -1.957 -0.401
16 C5A C C5A N Y N 0 3.541 0.221 -0.828
17 C6A C C6A N Y N 0 3.616 1.588 -0.645
18 C7A C C7A N N N 0 2.424 -0.39 -1.635
19 P1 P P1 N N N 0 -5.497 0.457 0.0
20 O1 O O1 N N N 0 -5.901 -0.938 -0.281
21 O2 O O2 N N N 0 -6.58 1.143 0.974
22 O3 O O3 N N N 0 -5.418 1.282 -1.38
23 HM21 H HM21 N N N 0 6.339 1.992 2.457
24 HM22 H HM22 N N N 0 7.534 1.306 1.33
25 HM23 H HM23 N N N 0 6.853 2.923 1.03
26 H2 H H2 N N N 0 2.1 -2.82 -0.512
27 HM41 H HM41 N N N 0 -0.392 1.425 -1.658
28 HM42 H HM42 N N N 0 -0.121 1.974 0.013
29 HM43 H HM43 N N N 0 1.263 1.739 -1.082
30 H61 H H61 N N N 0 -1.921 -0.414 2.048
31 H62 H H62 N N N 0 -1.51 1.096 1.2
32 H71 H H71 N N N 0 -2.685 0.278 -0.825
33 H72 H H72 N N N 0 -3.096 -1.232 0.023
34 H41N H H41N N N N 0 5.181 -2.507 0.007
35 H42N H H42N N N N 0 3.784 -2.371 -0.916
36 H6A H H6A N N N 0 2.872 2.239 -1.08
37 H7A1 H H7A1 N N N 0 2.81 -1.23 -2.212
38 H7A2 H H7A2 N N N 0 2.015 0.359 -2.314
39 HO2 H HO2 N N N 0 -7.474 1.173 0.609
40 HO3 H HO3 N N N 0 -5.159 2.207 -1.272