Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TDI    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 N1 C N doub 1.32 N Y
2 C2 N3 C N sing 1.31 N Y
3 C2 H2 C H sing 1.08 N N
4 C4 C5 C C sing 1.41 N Y
5 C4 C9 C C sing 1.46 N Y
6 C4 N3 C N doub 1.34 N Y
7 C5 C6 C C doub 1.4 N Y
8 C5 N7 C N sing 1.38 N Y
9 C6 N6 C N sing 1.38 N N
10 C6 N1 C N sing 1.33 N Y
11 CS5 S C S sing 1.81 N N
12 CS5 HS51 C H sing 1.09 N N
13 CS5 HS52 C H sing 1.09 N N
14 CS5 HS53 C H sing 1.09 N N
15 S C5' S C sing 1.81 N N
16 C5' C4' C C sing 1.53 N N
17 C5' H5'1 C H sing 1.09 N N
18 C5' H5'2 C H sing 1.09 N N
19 C4' C1' C C sing 1.54 N N
20 C4' C3' C C sing 1.55 N N
21 C4' H4' C H sing 1.09 N N
22 C1' N1' C N sing 1.48 N N
23 C1' H1'1 C H sing 1.09 N N
24 C1' H1'2 C H sing 1.09 N N
25 N1' C10 N C sing 1.47 N N
26 N1' C2' N C sing 1.49 N N
27 C10 C9 C C sing 1.51 N N
28 C10 H101 C H sing 1.09 N N
29 C10 H102 C H sing 1.09 N N
30 C9 C8 C C doub 1.35 N Y
31 C8 N7 C N sing 1.36 N Y
32 C8 H8 C H sing 1.08 N N
33 N7 HN7 N H sing 0.97 N N
34 N6 HN61 N H sing 0.97 N N
35 N6 HN62 N H sing 0.97 N N
36 C2' C3' C C sing 1.55 N N
37 C2' H2'1 C H sing 1.09 N N
38 C2' H2'2 C H sing 1.09 N N
39 C3' O3' C O sing 1.43 N N
40 C3' H3' C H sing 1.09 N N
41 O3' H1 O H sing 0.97 N N