data_TDI
#
_chem_comp.id TDI
_chem_comp.name (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H19 N5 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4-(METHYLTHIOMETHYL)PYRROLIDINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-13
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 293.388
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TDI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Y6Q
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TDI C2 C2 C 0 1 Y N N N N N 53.790 75.119 21.033 3.569 1.913 0.421 C2 TDI 1
TDI C4 C4 C 0 1 Y N N N N N 55.679 74.355 19.843 2.493 -0.120 0.387 C4 TDI 2
TDI C5 C5 C 0 1 Y N N N N N 54.877 74.090 18.701 3.637 -0.705 -0.184 C5 TDI 3
TDI C6 C6 C 0 1 Y N N N N N 53.497 74.366 18.796 4.742 0.116 -0.436 C6 TDI 4
TDI CS5 CS5 C 0 1 N N N N N N 56.570 68.203 23.222 -6.572 -0.838 -1.052 CS5 TDI 5
TDI S S S 0 1 N N N N N N 55.708 69.777 23.563 -5.328 -0.628 0.251 S TDI 6
TDI "C5'" C5* C 0 1 N N N N N N 56.913 70.567 22.496 -4.078 0.322 -0.657 "C5'" TDI 7
TDI "C4'" C4* C 0 1 N N S N N N 58.251 71.265 22.340 -2.897 0.626 0.267 "C4'" TDI 8
TDI "C1'" C1* C 0 1 N N N N N N 58.578 72.050 21.066 -2.145 -0.672 0.617 "C1'" TDI 9
TDI "N1'" N1* N 0 1 N N N N N N 58.843 73.448 21.530 -0.771 -0.534 0.086 "N1'" TDI 10
TDI C10 C10 C 0 1 N N N N N N 58.245 74.061 20.335 0.133 -1.081 1.107 C10 TDI 11
TDI C9 C9 C 0 1 Y N N N N N 57.026 73.974 19.456 1.522 -1.199 0.536 C9 TDI 12
TDI C8 C8 C 0 1 Y N N N N N 56.982 73.527 18.181 2.101 -2.318 0.061 C8 TDI 13
TDI N7 N7 N 0 1 Y N N N N N 55.700 73.593 17.722 3.364 -2.040 -0.372 N7 TDI 14
TDI N6 N6 N 0 1 N N N N N N 52.669 74.119 17.707 5.894 -0.403 -1.003 N6 TDI 15
TDI N1 N1 N 0 1 Y N N N N N 52.999 74.877 19.974 4.662 1.405 -0.120 N1 TDI 16
TDI N3 N3 N 0 1 Y N N N N N 55.108 74.866 20.980 2.506 1.184 0.678 N3 TDI 17
TDI "C2'" C2* C 0 1 N N N N N N 57.858 73.667 22.639 -0.507 0.926 0.021 "C2'" TDI 18
TDI "C3'" C3* C 0 1 N N R N N N 57.862 72.329 23.412 -1.860 1.512 -0.460 "C3'" TDI 19
TDI "O3'" O3* O 0 1 N N N N N N 59.161 72.345 24.048 -1.988 2.880 -0.065 "O3'" TDI 20
TDI H2 H2 H 0 1 N N N N N N 53.352 75.531 21.958 3.549 2.966 0.662 H2 TDI 21
TDI HS51 1HS5 H 0 0 N N N N N N 57.664 68.092 23.405 -6.131 -1.375 -1.892 HS51 TDI 22
TDI HS52 2HS5 H 0 0 N N N N N N 55.821 67.712 23.886 -7.416 -1.405 -0.661 HS52 TDI 23
TDI HS53 3HS5 H 0 0 N N N N N N 56.737 67.850 22.178 -6.916 0.141 -1.387 HS53 TDI 24
TDI "H5'1" 1H5* H 0 0 N N N N N N 56.256 71.337 22.028 -3.730 -0.258 -1.512 "H5'1" TDI 25
TDI "H5'2" 2H5* H 0 0 N N N N N N 57.053 69.749 21.751 -4.515 1.258 -1.007 "H5'2" TDI 26
TDI "H4'" H4* H 0 1 N N N N N N 59.121 70.569 22.379 -3.245 1.118 1.175 "H4'" TDI 27
TDI "H1'1" 1H1* H 0 0 N N N N N N 57.794 71.977 20.277 -2.113 -0.803 1.699 "H1'1" TDI 28
TDI "H1'2" 2H1* H 0 0 N N N N N N 59.407 71.609 20.464 -2.639 -1.524 0.151 "H1'2" TDI 29
TDI H101 1H10 H 0 0 N N N N N N 59.065 73.940 19.590 0.150 -0.417 1.971 H101 TDI 30
TDI H102 2H10 H 0 0 N N N N N N 58.237 75.139 20.619 -0.219 -2.067 1.412 H102 TDI 31
TDI H8 H8 H 0 1 N N N N N N 57.852 73.166 17.607 1.634 -3.292 0.029 H8 TDI 32
TDI HN7 HN7 H 0 1 N N N N N N 55.402 73.313 16.788 3.977 -2.686 -0.756 HN7 TDI 33
TDI HN61 1HN6 H 0 0 N N N N N N 52.787 73.146 17.424 5.941 -1.345 -1.230 HN61 TDI 34
TDI HN62 2HN6 H 0 0 N N N N N N 51.671 74.319 17.776 6.654 0.175 -1.173 HN62 TDI 35
TDI "H2'1" 1H2* H 0 0 N N N N N N 56.849 73.996 22.298 -0.250 1.315 1.006 "H2'1" TDI 36
TDI "H2'2" 2H2* H 0 0 N N N N N N 58.069 74.562 23.270 0.284 1.143 -0.697 "H2'2" TDI 37
TDI "H3'" H3* H 0 1 N N N N N N 56.938 72.172 24.016 -1.960 1.414 -1.541 "H3'" TDI 38
TDI H1 H1 H 0 1 N N N N N N 58.924 72.993 24.701 -1.267 3.362 -0.491 H1 TDI 39
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TDI C2 N1 DOUB Y N 1
TDI C2 N3 SING Y N 2
TDI C2 H2 SING N N 3
TDI C4 C5 SING Y N 4
TDI C4 C9 SING Y N 5
TDI C4 N3 DOUB Y N 6
TDI C5 C6 DOUB Y N 7
TDI C5 N7 SING Y N 8
TDI C6 N6 SING N N 9
TDI C6 N1 SING Y N 10
TDI CS5 S SING N N 11
TDI CS5 HS51 SING N N 12
TDI CS5 HS52 SING N N 13
TDI CS5 HS53 SING N N 14
TDI S "C5'" SING N N 15
TDI "C5'" "C4'" SING N N 16
TDI "C5'" "H5'1" SING N N 17
TDI "C5'" "H5'2" SING N N 18
TDI "C4'" "C1'" SING N N 19
TDI "C4'" "C3'" SING N N 20
TDI "C4'" "H4'" SING N N 21
TDI "C1'" "N1'" SING N N 22
TDI "C1'" "H1'1" SING N N 23
TDI "C1'" "H1'2" SING N N 24
TDI "N1'" C10 SING N N 25
TDI "N1'" "C2'" SING N N 26
TDI C10 C9 SING N N 27
TDI C10 H101 SING N N 28
TDI C10 H102 SING N N 29
TDI C9 C8 DOUB Y N 30
TDI C8 N7 SING Y N 31
TDI C8 H8 SING N N 32
TDI N7 HN7 SING N N 33
TDI N6 HN61 SING N N 34
TDI N6 HN62 SING N N 35
TDI "C2'" "C3'" SING N N 36
TDI "C2'" "H2'1" SING N N 37
TDI "C2'" "H2'2" SING N N 38
TDI "C3'" "O3'" SING N N 39
TDI "C3'" "H3'" SING N N 40
TDI "O3'" H1 SING N N 41
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TDI SMILES ACDLabs 10.04 S(C)CC3CN(Cc2cnc1c2ncnc1N)CC3O
TDI SMILES_CANONICAL CACTVS 3.341 CSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23
TDI SMILES CACTVS 3.341 CSC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23
TDI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CSC[C@H]1C[N@](C[C@@H]1O)Cc2c[nH]c3c2ncnc3N
TDI SMILES "OpenEye OEToolkits" 1.5.0 CSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N
TDI InChI InChI 1.03 InChI=1S/C13H19N5OS/c1-20-6-9-4-18(5-10(9)19)3-8-2-15-12-11(8)16-7-17-13(12)14/h2,7,9-10,15,19H,3-6H2,1H3,(H2,14,16,17)/t9-,10+/m1/s1
TDI InChIKey InChI 1.03 NTHMDFGHOCNNOE-ZJUUUORDSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TDI "SYSTEMATIC NAME" ACDLabs 10.04 (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(methylsulfanyl)methyl]pyrrolidin-3-ol
TDI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (1S,3R,4S)-1-[(4-amino-5H-pyrrolo[4,5-d]pyrimidin-7-yl)methyl]-4-(methylsulfanylmethyl)pyrrolidin-3-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TDI 'Create component' 2004-12-13 PDBJ
TDI 'Modify descriptor' 2011-06-04 RCSB
TDI 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TDI
_pdbx_chem_comp_synonyms.name (3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4-(METHYLTHIOMETHYL)PYRROLIDINE
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id TDI
_pdbe_chem_comp_drugbank_details.drugbank_id DB08606
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'(3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
TDI '(3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4-(METHYLTHIOMETHYL)PYRROLIDINE' wwPDB ?
TDI '(3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL' DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id TDI
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08606
_pdbe_chem_comp_drugbank_classification.parent Pyrrolopyrimidines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Pyrrolopyrimidines
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as pyrrolopyrimidines. These are compounds containing a pyrrolopyrimidine moiety, which consists of a pyrrole ring fused to a pyrimidine. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Pyrimidine is a 6-membered ring consisting of four carbon atoms and two nitrogen centers at the 1- and 3- ring positions.'
#
_pdbe_chem_comp_drugbank_targets.comp_id TDI
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08606
_pdbe_chem_comp_drugbank_targets.name "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase"
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P0AF12
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
TDI C2 C 3.000 -0.593 1
TDI C4 C 5.598 -0.593 2
TDI C5 C 5.598 -2.092 3
TDI C6 C 4.299 -2.842 4
TDI CS5 C 15.318 0.997 5
TDI S S 13.949 1.609 6
TDI "C5'" C 12.734 0.729 7
TDI "C4'" C 11.364 1.342 8
TDI "C1'" C 10.064 0.594 9
TDI "N1'" N 8.951 1.600 10
TDI C10 C 7.483 1.290 11
TDI C9 C 7.018 -0.136 12
TDI C8 C 7.893 -1.343 13
TDI N7 N 7.018 -2.550 14
TDI N6 N 4.299 -4.343 15
TDI N1 N 3.000 -2.092 16
TDI N3 N 4.299 0.158 17
TDI "C2'" C 9.564 2.969 18
TDI "C3'" C 11.055 2.809 19
TDI "O3'" O 12.061 3.922 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
TDI C2 N1 DOUBLE NONE 1
TDI C2 N3 SINGLE NONE 2
TDI C4 C5 SINGLE NONE 3
TDI C4 C9 SINGLE NONE 4
TDI C4 N3 DOUBLE NONE 5
TDI C5 C6 DOUBLE NONE 6
TDI C5 N7 SINGLE NONE 7
TDI C6 N6 SINGLE NONE 8
TDI C6 N1 SINGLE NONE 9
TDI CS5 S SINGLE NONE 10
TDI S "C5'" SINGLE NONE 11
TDI "C4'" "C5'" SINGLE BEGINWEDGE 12
TDI "C4'" "C1'" SINGLE NONE 13
TDI "C4'" "C3'" SINGLE NONE 14
TDI "C1'" "N1'" SINGLE NONE 15
TDI "N1'" C10 SINGLE NONE 16
TDI "N1'" "C2'" SINGLE NONE 17
TDI C10 C9 SINGLE NONE 18
TDI C9 C8 DOUBLE NONE 19
TDI C8 N7 SINGLE NONE 20
TDI "C2'" "C3'" SINGLE NONE 21
TDI "C3'" "O3'" SINGLE BEGINDASH 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
TDI MurckoScaffold S1 scaffold 'c1ncc2[nH]cc(CN3CCCC3)c2n1' InChI=1S/C11H14N4/c1-2-4-15(3-1)7-9-5-13-10-6-12-8-14-11(9)10/h5-6,8,13H,1-4,7H2 LSNHIITUIUUQQV-UHFFFAOYSA-N
TDI pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
TDI pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
TDI C2 S1 1
TDI C4 S1 1
TDI C5 S1 1
TDI C6 S1 1
TDI "C4'" S1 1
TDI "C1'" S1 1
TDI "N1'" S1 1
TDI C10 S1 1
TDI C9 S1 1
TDI C8 S1 1
TDI N7 S1 1
TDI N1 S1 1
TDI N3 S1 1
TDI "C2'" S1 1
TDI "C3'" S1 1
TDI C5 F1 1
TDI C4 F1 1
TDI N3 F1 1
TDI C2 F1 1
TDI N1 F1 1
TDI C6 F1 1
TDI C5 F2 1
TDI C4 F2 1
TDI C9 F2 1
TDI C8 F2 1
TDI N7 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id TDI
_pdbe_chem_comp_rdkit_properties.exactmw 293.131
_pdbe_chem_comp_rdkit_properties.amw 293.396
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 39
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.538
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 148.283
_pdbe_chem_comp_rdkit_properties.tpsa 91.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.168
_pdbe_chem_comp_rdkit_properties.CrippenMR 78.161
_pdbe_chem_comp_rdkit_properties.chi0v 10.369
_pdbe_chem_comp_rdkit_properties.chi1v 5.915
_pdbe_chem_comp_rdkit_properties.chi2v 2.617
_pdbe_chem_comp_rdkit_properties.chi3v 2.617
_pdbe_chem_comp_rdkit_properties.chi4v 1.730
_pdbe_chem_comp_rdkit_properties.chi0n 28.553
_pdbe_chem_comp_rdkit_properties.chi1n 14.348
_pdbe_chem_comp_rdkit_properties.chi2n 2.311
_pdbe_chem_comp_rdkit_properties.chi3n 2.311
_pdbe_chem_comp_rdkit_properties.chi4n 1.490
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 3.713
_pdbe_chem_comp_rdkit_properties.kappa2 5.590
_pdbe_chem_comp_rdkit_properties.kappa3 2.482
_pdbe_chem_comp_rdkit_properties.Phi 1.038
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
TDI UniChem DrugBank DB08606
TDI UniChem ZINC ZINC000011686540
TDI UniChem SureChEMBL SCHEMBL15593380
TDI UniChem BRENDA 10251
TDI UniChem BRENDA 11566
TDI UniChem BRENDA 143829
TDI UniChem BRENDA 165980
TDI UniChem BRENDA 194384
TDI UniChem BRENDA 201201
TDI UniChem BRENDA 201204
TDI UniChem BRENDA 209529
TDI UniChem BRENDA 209530
TDI UniChem BRENDA 267305
TDI UniChem BRENDA 3417
TDI UniChem BRENDA 42313
TDI UniChem BRENDA 62470
TDI UniChem BRENDA 62471
TDI UniChem MedChemExpress HY-101496
TDI UniChem 'Probes And Drugs' PD004286
TDI UniChem BindingDb 22113
TDI UniChem 'PubChem TPHARMA' 15345339
TDI UniChem 'PubChem TPHARMA' 16572493
TDI UniChem 'PubChem TPHARMA' 85182479
TDI UniChem PubChem 656970
TDI UniChem Nikkaji J2.487.076F
TDI UniChem Nikkaji J2.517.641C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
TDI C2 3.379 1.328 -2.672 ETKDGv3 1
TDI C4 2.834 0.514 -0.537 ETKDGv3 2
TDI C5 3.940 -0.384 -0.603 ETKDGv3 3
TDI C6 4.723 -0.407 -1.683 ETKDGv3 4
TDI CS5 -5.902 0.645 -0.557 ETKDGv3 5
TDI S -5.300 -0.520 0.708 ETKDGv3 6
TDI "C5'" -3.867 0.490 1.239 ETKDGv3 7
TDI "C4'" -2.632 0.232 0.356 ETKDGv3 8
TDI "C1'" -1.468 1.144 0.732 ETKDGv3 9
TDI "N1'" -0.249 0.388 0.442 ETKDGv3 10
TDI C10 0.900 0.898 1.212 ETKDGv3 11
TDI C9 2.170 0.265 0.731 ETKDGv3 12
TDI C8 2.845 -0.722 1.344 ETKDGv3 13
TDI N7 3.974 -1.173 0.577 ETKDGv3 14
TDI N6 5.832 -1.298 -1.802 ETKDGv3 15
TDI N1 4.403 0.512 -2.753 ETKDGv3 16
TDI N3 2.532 1.330 -1.499 ETKDGv3 17
TDI "C2'" -0.577 -1.005 0.770 ETKDGv3 18
TDI "C3'" -2.069 -1.191 0.496 ETKDGv3 19
TDI "O3'" -2.246 -1.913 -0.696 ETKDGv3 20
TDI H2 3.163 2.003 -3.490 ETKDGv3 21
TDI HS51 -6.168 1.615 -0.088 ETKDGv3 22
TDI HS52 -5.132 0.804 -1.338 ETKDGv3 23
TDI HS53 -6.808 0.220 -1.034 ETKDGv3 24
TDI "H5'1" -4.132 1.569 1.217 ETKDGv3 25
TDI "H5'2" -3.635 0.230 2.294 ETKDGv3 26
TDI "H4'" -2.890 0.432 -0.708 ETKDGv3 27
TDI "H1'1" -1.519 1.413 1.814 ETKDGv3 28
TDI "H1'2" -1.490 2.077 0.128 ETKDGv3 29
TDI H101 0.768 0.726 2.305 ETKDGv3 30
TDI H102 0.993 1.996 1.059 ETKDGv3 31
TDI H8 2.562 -1.155 2.295 ETKDGv3 32
TDI HN7 4.633 -1.944 0.822 ETKDGv3 33
TDI HN61 6.082 -1.967 -1.041 ETKDGv3 34
TDI HN62 6.416 -1.286 -2.667 ETKDGv3 35
TDI "H2'1" -0.378 -1.227 1.845 ETKDGv3 36
TDI "H2'2" 0.039 -1.693 0.151 ETKDGv3 37
TDI "H3'" -2.529 -1.745 1.349 ETKDGv3 38
TDI H1 -3.198 -2.193 -0.718 ETKDGv3 39
#