Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SRY    

Bonds between two atoms of the molecule

Total Number of Bonds: 81


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C11 N11 C N sing 1.46 N N
2 C11 C21 C C sing 1.53 N N
3 C11 C61 C C sing 1.53 N N
4 C11 H11 C H sing 1.09 N N
5 N11 CA1 N C sing 1.37 N N
6 N11 HN11 N H sing 0.97 N N
7 CA1 NB1 C N sing 1.37 N N
8 CA1 NC1 C N doub 1.3 N N
9 NB1 HB11 N H sing 0.97 N N
10 NB1 HB12 N H sing 0.97 N N
11 NC1 HC11 N H sing 0.97 N N
12 C21 O21 C O sing 1.43 N N
13 C21 C31 C C sing 1.53 N N
14 C21 H21 C H sing 1.09 N N
15 O21 HO21 O H sing 0.97 N N
16 C31 N31 C N sing 1.47 N N
17 C31 C41 C C sing 1.53 N N
18 C31 H31 C H sing 1.09 N N
19 N31 CD1 N C sing 1.38 N N
20 N31 HN31 N H sing 0.97 N N
21 CD1 NE1 C N sing 1.37 N N
22 CD1 NF1 C N doub 1.3 N N
23 NE1 HE11 N H sing 0.97 N N
24 NE1 HE12 N H sing 0.97 N N
25 NF1 HF11 N H sing 0.97 N N
26 C41 O41 C O sing 1.43 N N
27 C41 C51 C C sing 1.53 N N
28 C41 H41 C H sing 1.09 N N
29 O41 C12 O C sing 1.43 N N
30 C51 O51 C O sing 1.43 N N
31 C51 C61 C C sing 1.53 N N
32 C51 H51 C H sing 1.09 N N
33 O51 HO51 O H sing 0.97 N N
34 C61 O61 C O sing 1.43 N N
35 C61 H61 C H sing 1.09 N N
36 O61 HO61 O H sing 0.97 N N
37 C12 C22 C C sing 1.54 N N
38 C12 O42 C O sing 1.44 N N
39 C12 H12 C H sing 1.09 N N
40 C22 C32 C C sing 1.54 N N
41 C22 O13 C O sing 1.43 N N
42 C22 H22 C H sing 1.09 N N
43 C32 O32 C O sing 1.43 N N
44 C32 CG2 C C sing 1.51 N N
45 C32 C42 C C sing 1.54 N N
46 O32 HO32 O H sing 0.97 N N
47 CG2 OG2 C O doub 1.21 N N
48 CG2 HG21 C H sing 1.08 N N
49 C42 CH2 C C sing 1.53 N N
50 C42 O42 C O sing 1.44 N N
51 C42 H42 C H sing 1.09 N N
52 CH2 HH21 C H sing 1.09 N N
53 CH2 HH22 C H sing 1.09 N N
54 CH2 HH23 C H sing 1.09 N N
55 O13 C13 O C sing 1.43 N N
56 C13 C23 C C sing 1.53 N N
57 C13 O53 C O sing 1.43 N N
58 C13 H13 C H sing 1.09 N N
59 C23 N23 C N sing 1.47 N N
60 C23 C33 C C sing 1.53 N N
61 C23 H23 C H sing 1.09 N N
62 N23 CI3 N C sing 1.47 N N
63 N23 HN23 N H sing 1.01 N N
64 CI3 HI31 C H sing 1.09 N N
65 CI3 HI32 C H sing 1.09 N N
66 CI3 HI33 C H sing 1.09 N N
67 C33 O33 C O sing 1.43 N N
68 C33 C43 C C sing 1.53 N N
69 C33 H33 C H sing 1.09 N N
70 O33 HO33 O H sing 0.97 N N
71 C43 O43 C O sing 1.43 N N
72 C43 C53 C C sing 1.53 N N
73 C43 H43 C H sing 1.09 N N
74 O43 HO43 O H sing 0.97 N N
75 C53 O53 C O sing 1.43 N N
76 C53 C63 C C sing 1.53 N N
77 C53 H53 C H sing 1.09 N N
78 C63 O63 C O sing 1.43 N N
79 C63 H631 C H sing 1.09 N N
80 C63 H632 C H sing 1.09 N N
81 O63 HO63 O H sing 0.97 N N