Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SRY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 79


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C11 C C11 R N N 0 -4.507 0.184 -0.242
2 N11 N N11 N N N 0 -5.686 0.67 -0.963
3 CA1 C CA1 N N N 0 -6.824 -0.099 -1.017
4 NB1 N NB1 N N N 0 -6.856 -1.324 -0.394
5 NC1 N NC1 N N N 0 -7.873 0.334 -1.659
6 C21 C C21 R N N 0 -3.657 1.374 0.207
7 O21 O O21 N N N 0 -4.429 2.213 1.068
8 C31 C C31 S N N 0 -2.425 0.866 0.961
9 N31 N N31 N N N 0 -1.611 2.006 1.39
10 CD1 C CD1 N N N 0 -1.902 2.653 2.568
11 NE1 N NE1 N N N 0 -1.138 3.722 2.971
12 NF1 N NF1 N N N 0 -2.902 2.252 3.302
13 C41 C C41 R N N 0 -1.599 -0.033 0.039
14 O41 O O41 N N N 0 -0.449 -0.507 0.743
15 C51 C C51 R N N 0 -2.449 -1.223 -0.41
16 O51 O O51 N N N 0 -1.676 -2.063 -1.27
17 C61 C C61 S N N 0 -3.68 -0.715 -1.163
18 O61 O O61 N N N 0 -4.474 -1.827 -1.582
19 C12 C C12 R N N 0 0.684 -0.752 -0.093
20 C22 C C22 S N N 0 1.91 -1.14 0.763
21 C32 C C32 S N N 0 1.893 -2.684 0.766
22 O32 O O32 N N N 0 3.085 -3.2 0.168
23 CG2 C CG2 N N N 0 1.739 -3.208 2.17
24 OG2 O OG2 N N N 0 0.791 -3.898 2.457
25 C42 C C42 S N N 0 0.659 -3.048 -0.089
26 CH2 C CH2 N N N 0 0.943 -4.291 -0.935
27 O42 O O42 N N N 0 0.447 -1.899 -0.938
28 O13 O O13 N N N 0 3.113 -0.653 0.163
29 C13 C C13 S N N 0 3.562 0.596 0.692
30 C23 C C23 S N N 0 5.014 0.837 0.271
31 N23 N N23 N N N 0 5.851 -0.276 0.739
32 CI3 C CI3 N N N 0 6.284 -0.061 2.126
33 C33 C C33 S N N 0 5.087 0.925 -1.257
34 O33 O O33 N N N 0 6.426 1.222 -1.655
35 C43 C C43 R N N 0 4.15 2.037 -1.738
36 O43 O O43 N N N 0 4.155 2.081 -3.166
37 C53 C C53 S N N 0 2.731 1.75 -1.24
38 O53 O O53 N N N 0 2.74 1.65 0.186
39 C63 C C63 N N N 0 1.801 2.888 -1.665
40 O63 O O63 N N N 0 0.457 2.566 -1.302
41 H11 H H11 N N N 0 -4.825 -0.386 0.632
42 HN11 H 1HN1 N N N 0 -5.663 1.534 -1.403
43 HB11 H 1HB1 N N N 0 -6.076 -1.646 0.084
44 HB12 H 2HB1 N N N 0 -7.66 -1.866 -0.432
45 HC11 H 1HC1 N N N 0 -7.85 1.198 -2.098
46 H21 H H21 N N N 0 -3.339 1.943 -0.666
47 HO21 H 1HO2 N N N 0 -5.227 2.572 0.655
48 H31 H H31 N N N 0 -2.743 0.297 1.834
49 HN31 H 1HN3 N N N 0 -0.867 2.304 0.844
50 HE11 H 1HE1 N N N 0 -0.394 4.02 2.425
51 HE12 H 2HE1 N N N 0 -1.343 4.179 3.802
52 HF11 H 1HF1 N N N 0 -3.441 1.498 3.018
53 H41 H H41 N N N 0 -1.281 0.536 -0.835
54 H51 H H51 N N N 0 -2.767 -1.792 0.464
55 HO51 H 1HO5 N N N 0 -2.153 -2.839 -1.594
56 H61 H H61 N N N 0 -3.362 -0.146 -2.037
57 HO61 H 1HO6 N N N 0 -4.012 -2.44 -2.17
58 H12 H H12 N N N 0 0.906 0.127 -0.698
59 H22 H H22 N N N 0 1.805 -0.754 1.777
60 HO32 H 2HO3 N N N 0 3.127 -4.165 0.144
61 HG21 H 1HG2 N N N 0 2.477 -2.966 2.921
62 H42 H H42 N N N 0 -0.209 -3.215 0.549
63 HH21 H 1HH2 N N N 0 1.181 -5.129 -0.28
64 HH22 H 2HH2 N N N 0 0.064 -4.534 -1.531
65 HH23 H 3HH2 N N N 0 1.788 -4.095 -1.596
66 H13 H H13 N N N 0 3.497 0.575 1.78
67 H23 H H23 N N N 0 5.37 1.77 0.708
68 HN23 H 3HN2 N N N 0 5.369 -1.157 0.643
69 HI31 H 1HI3 N N N 0 6.862 0.861 2.188
70 HI32 H 2HI3 N N N 0 5.41 0.014 2.772
71 HI33 H 3HI3 N N N 0 6.903 -0.9 2.447
72 H33 H H33 N N N 0 4.779 -0.026 -1.692
73 HO33 H 3HO3 N N N 0 6.546 1.293 -2.612
74 H43 H H43 N N N 0 4.489 2.995 -1.343
75 HO43 H 3HO4 N N N 0 3.582 2.764 -3.541
76 H53 H H53 N N N 0 2.378 0.812 -1.668
77 H631 H 1H63 N N N 0 2.101 3.809 -1.166
78 H632 H 2H63 N N N 0 1.863 3.023 -2.745
79 HO63 H 3HO6 N N N 0 -0.189 3.244 -1.543