Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : SO5    

Bonds between two atoms of the molecule

Total Number of Bonds: 98


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O33 P3 O P doub 1.48 N N
2 O2' C2' O C sing 1.43 N N
3 P3 O31 P O sing 1.61 N N
4 P3 O3' P O sing 1.61 N N
5 P3 O32 P O sing 1.61 N N
6 C2 N3 C N doub 1.32 N Y
7 C2 N1 C N sing 1.32 N Y
8 O3' C3' O C sing 1.43 N N
9 N3 C4 N C sing 1.33 N Y
10 O56 SS4 O S doub 1.42 N N
11 N1 C6 N C doub 1.33 N Y
12 CS2 CS3 C C sing 1.53 N N
13 CS2 SS4 C S sing 1.81 N N
14 CS2 CS1 C C sing 1.51 N N
15 OPS CS1 O C sing 1.34 N N
16 OPS CP1 O C sing 1.45 N N
17 C2' C3' C C sing 1.55 N N
18 C2' C1' C C sing 1.55 N N
19 SS4 OS4 S O doub 1.42 N N
20 SS4 OS5 S O sing 1.52 N N
21 C4 N9 C N sing 1.37 N Y
22 C4 C5 C C doub 1.4 N Y
23 C3' C4' C C sing 1.54 N N
24 CS1 OS1 C O doub 1.21 N N
25 C6 C5 C C sing 1.41 N Y
26 C6 N6 C N sing 1.38 N N
27 C1' N9 C N sing 1.47 N N
28 C1' O4' C O sing 1.44 N N
29 CP1 CP2 C C sing 1.53 N N
30 N9 C8 N C sing 1.36 N Y
31 C5 N7 C N sing 1.35 N Y
32 C4' O4' C O sing 1.44 N N
33 C4' C5' C C sing 1.53 N N
34 OP1 CP3 O C doub 1.21 N N
35 CP2 NP1 C N sing 1.46 N N
36 C8 N7 C N doub 1.3 N Y
37 CP5 NP2 C N sing 1.47 N N
38 CP5 CP4 C C sing 1.53 N N
39 CP3 NP1 C N sing 1.35 N N
40 CP3 CP4 C C sing 1.51 N N
41 O5' C5' O C sing 1.43 N N
42 O5' P1 O P sing 1.61 N N
43 NP2 CP6 N C sing 1.35 N N
44 O12 P1 O P doub 1.48 N N
45 O11 P1 O P sing 1.61 N N
46 P1 O6 P O sing 1.61 N N
47 OP3 CP7 O C sing 1.43 N N
48 CP6 OP2 C O doub 1.21 N N
49 CP6 CP7 C C sing 1.51 N N
50 CP7 CPA C C sing 1.53 N N
51 O6 P2 O P sing 1.61 N N
52 O21 P2 O P doub 1.48 N N
53 CPA CP8 C C sing 1.53 N N
54 CPA CPB C C sing 1.53 N N
55 CPA CP9 C C sing 1.53 N N
56 P2 O7 P O sing 1.61 N N
57 P2 O22 P O sing 1.61 N N
58 O7 CPB O C sing 1.43 N N
59 CS2 H1 C H sing 1.09 N N
60 CS3 H2 C H sing 1.09 N N
61 CS3 H3 C H sing 1.09 N N
62 CS3 H4 C H sing 1.09 N N
63 CP1 H5 C H sing 1.09 N N
64 CP1 H6 C H sing 1.09 N N
65 CP2 H7 C H sing 1.09 N N
66 CP2 H8 C H sing 1.09 N N
67 NP1 H9 N H sing 0.97 N N
68 CP4 H10 C H sing 1.09 N N
69 CP4 H11 C H sing 1.09 N N
70 CP5 H12 C H sing 1.09 N N
71 CP5 H13 C H sing 1.09 N N
72 NP2 H14 N H sing 0.97 N N
73 CP7 H15 C H sing 1.09 N N
74 OP3 H16 O H sing 0.97 N N
75 CP9 H17 C H sing 1.09 N N
76 CP9 H18 C H sing 1.09 N N
77 CP9 H19 C H sing 1.09 N N
78 CP8 H20 C H sing 1.09 N N
79 CP8 H21 C H sing 1.09 N N
80 CP8 H22 C H sing 1.09 N N
81 CPB H23 C H sing 1.09 N N
82 CPB H24 C H sing 1.09 N N
83 O22 H25 O H sing 0.97 N N
84 O11 H26 O H sing 0.97 N N
85 C5' H27 C H sing 1.09 N N
86 C5' H28 C H sing 1.09 N N
87 C4' H29 C H sing 1.09 N N
88 C1' H30 C H sing 1.09 N N
89 C2' H31 C H sing 1.09 N N
90 O2' H32 O H sing 0.97 N N
91 C3' H33 C H sing 1.09 N N
92 O31 H34 O H sing 0.97 N N
93 O32 H35 O H sing 0.97 N N
94 C8 H36 C H sing 1.08 N N
95 N6 H37 N H sing 0.97 N N
96 N6 H38 N H sing 0.97 N N
97 C2 H39 C H sing 1.08 N N
98 OS5 H40 O H sing 0.97 N N