Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SO5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 96


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O56 O O1 N N N 0 -12.466 -4.282 -1.031
2 SS4 S S1 N N N 0 -11.163 -3.916 -1.464
3 OS5 O O2 N N N 0 -10.499 -5.24 -1.816
4 OS4 O O3 N N N 0 -10.974 -3.111 -2.619
5 CS2 C C1 R N N 0 -10.188 -3.276 -0.075
6 CS3 C C2 N N N 0 -10.139 -4.322 1.039
7 CS1 C C3 N N N 0 -10.826 -2.015 0.448
8 OS1 O O4 N N N 0 -12.008 -1.824 0.285
9 OPS O O5 N N N 0 -10.082 -1.104 1.094
10 CP1 C C4 N N N 0 -10.763 0.087 1.57
11 CP2 C C5 N N N 0 -9.76 1.001 2.276
12 NP1 N N1 N N N 0 -8.771 1.481 1.308
13 CP3 C C6 N N N 0 -7.783 2.307 1.706
14 OP1 O O6 N N N 0 -7.713 2.652 2.867
15 CP4 C C7 N N N 0 -6.766 2.801 0.71
16 CP5 C C8 N N N 0 -5.763 3.715 1.416
17 NP2 N N2 N N N 0 -4.775 4.196 0.447
18 CP6 C C9 N N N 0 -3.786 5.021 0.846
19 OP2 O O7 N N N 0 -3.769 5.44 1.984
20 CP7 C C10 R N N 0 -2.704 5.423 -0.122
21 OP3 O O8 N N N 0 -3.081 5.037 -1.446
22 CPA C C11 N N N 0 -1.395 4.727 0.258
23 CP9 C C12 N N N 0 -0.914 5.252 1.612
24 CP8 C C13 N N N 0 -1.628 3.218 0.35
25 CPB C C14 N N N 0 -0.336 5.016 -0.807
26 O7 O O9 N N N 0 0.886 4.367 -0.451
27 P2 P P1 N N N 0 2.22 4.455 -1.349
28 O21 O O10 N N N 0 1.916 4.015 -2.729
29 O22 O O11 N N N 0 2.749 5.976 -1.376
30 O6 O O12 N N N 0 3.355 3.503 -0.719
31 P1 P P2 N N N 0 4.75 2.913 -1.266
32 O11 O O13 N N N 0 5.892 4.042 -1.151
33 O12 O O14 N N N 0 4.594 2.512 -2.682
34 O5' O O15 N N N 0 5.172 1.632 -0.388
35 C5' C C15 N N N 0 6.31 0.822 -0.689
36 C4' C C16 R N N 0 6.42 -0.306 0.339
37 O4' O O16 N N N 0 5.308 -1.206 0.199
38 C1' C C17 R N N 0 5.795 -2.529 0.51
39 C2' C C18 R N N 0 7.196 -2.564 -0.153
40 O2' O O17 N N N 0 8.042 -3.516 0.494
41 C3' C C19 S N N 0 7.703 -1.121 0.087
42 O3' O O18 N N N 0 8.558 -1.075 1.232
43 P3 P P3 N N N 0 10.083 -0.563 1.167
44 O31 O O19 N N N 0 10.699 -0.524 2.654
45 O32 O O20 N N N 0 10.948 -1.569 0.255
46 O33 O O21 N N N 0 10.124 0.794 0.58
47 N9 N N3 N Y N 0 4.922 -3.55 -0.075
48 C8 C C20 N Y N 0 4.096 -3.387 -1.147
49 N7 N N4 N Y N 0 3.467 -4.499 -1.396
50 C5 C C21 N Y N 0 3.849 -5.443 -0.503
51 C4 C C22 N Y N 0 4.792 -4.848 0.351
52 C6 C C23 N Y N 0 3.516 -6.792 -0.287
53 N6 N N5 N N N 0 2.599 -7.433 -1.1
54 N1 N N6 N Y N 0 4.103 -7.436 0.716
55 C2 C C24 N Y N 0 4.98 -6.831 1.497
56 N3 N N7 N Y N 0 5.332 -5.575 1.324
57 H1 H H1 N N N 0 -9.175 -3.057 -0.413
58 H2 H H2 N N N 0 -9.677 -5.234 0.661
59 H3 H H3 N N N 0 -9.552 -3.937 1.874
60 H4 H H4 N N N 0 -11.152 -4.541 1.377
61 H5 H H5 N N N 0 -11.204 0.615 0.725
62 H6 H H6 N N N 0 -11.549 -0.199 2.27
63 H7 H H7 N N N 0 -10.286 1.851 2.711
64 H8 H H8 N N N 0 -9.255 0.444 3.066
65 H9 H H9 N N N 0 -8.828 1.206 0.379
66 H10 H H10 N N N 0 -6.24 1.951 0.275
67 H11 H H11 N N N 0 -7.272 3.357 -0.079
68 H12 H H12 N N N 0 -6.289 4.565 1.85
69 H13 H H13 N N N 0 -5.258 3.159 2.205
70 H14 H H14 N N N 0 -4.831 3.92 -0.481
71 H15 H H15 N N N 0 -2.565 6.503 -0.084
72 H16 H H16 N N N 0 -3.221 4.086 -1.553
73 H17 H H17 N N N 0 -1.632 4.978 2.385
74 H18 H H18 N N N 0 0.057 4.815 1.847
75 H19 H H19 N N N 0 -0.823 6.338 1.57
76 H20 H H20 N N N 0 -1.971 2.844 -0.615
77 H21 H H21 N N N 0 -0.696 2.722 0.621
78 H22 H H22 N N N 0 -2.383 3.012 1.109
79 H23 H H23 N N N 0 -0.679 4.642 -1.771
80 H24 H H24 N N N 0 -0.17 6.092 -0.872
81 H25 H H25 N N N 0 2.968 6.332 -0.503
82 H26 H H26 N N N 0 6.048 4.353 -0.248
83 H30 H H30 N N N 0 5.874 -2.665 1.588
84 H27 H H27 N N N 0 6.198 0.395 -1.686
85 H28 H H28 N N N 0 7.211 1.434 -0.655
86 H29 H H29 N N N 0 6.435 0.111 1.346
87 H31 H H31 N N N 0 7.117 -2.776 -1.219
88 H32 H H32 N N N 0 7.765 -4.435 0.373
89 H33 H H33 N N N 0 8.225 -0.749 -0.795
90 H34 H H34 N N N 0 11.618 -0.224 2.691
91 H35 H H35 N N N 0 10.966 -2.479 0.581
92 H36 H H36 N N N 0 3.979 -2.47 -1.706
93 H37 H H37 N N N 0 2.177 -6.953 -1.83
94 H38 H H38 N N N 0 2.377 -8.364 -0.941
95 H39 H H39 N N N 0 5.438 -7.393 2.297
96 H40 H H40 N N N 0 -10.917 -5.706 -2.553