Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SLQ    

Bonds between two atoms of the molecule

Total Number of Bonds: 64


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.33 N Y
2 N1 C6 N C sing 1.33 N Y
3 O1 C15 O C sing 1.43 N N
4 C2 N2 C N sing 1.39 N N
5 C2 N3 C N sing 1.32 N Y
6 N2 C12 N C sing 1.47 N N
7 N3 C4 N C doub 1.33 N Y
8 C4 C5 C C sing 1.4 N Y
9 C4 N9 C N sing 1.37 N Y
10 C5 C6 C C doub 1.41 N Y
11 C5 N7 C N sing 1.36 N Y
12 C6 N6 C N sing 1.38 N N
13 N6 CA' N C sing 1.47 N N
14 N7 C8 N C doub 1.3 N Y
15 C8 N9 C N sing 1.36 N Y
16 C9 N9 C N sing 1.47 N N
17 C9 C10 C C sing 1.53 N N
18 C9 C11 C C sing 1.53 N N
19 C1' C2' C C doub 1.38 N Y
20 C1' C6' C C sing 1.38 N Y
21 C1' CA' C C sing 1.51 N N
22 C12 C13 C C sing 1.53 N N
23 C12 C15 C C sing 1.53 N N
24 C13 C14 C C sing 1.53 N N
25 C1B N1B C N doub 1.33 N Y
26 C1B C2B C C sing 1.39 N Y
27 C1B C4' C C sing 1.48 N Y
28 N1B C5B N C sing 1.32 N Y
29 C2' C3' C C sing 1.38 N Y
30 C2B C3B C C doub 1.38 N Y
31 C3' C4' C C doub 1.39 N Y
32 C3B C4B C C sing 1.39 N Y
33 C4' C5' C C sing 1.39 N Y
34 C4B C5B C C doub 1.38 N Y
35 C5' C6' C C doub 1.38 N Y
36 O1 HO1 O H sing 0.97 N N
37 N2 HN2 N H sing 0.97 N N
38 N6 HN6 N H sing 0.97 N N
39 C8 H8 C H sing 1.08 N N
40 C9 H9 C H sing 1.09 N N
41 C10 H10 C H sing 1.09 N N
42 C10 H10A C H sing 1.09 N N
43 C10 H10B C H sing 1.09 N N
44 C11 H11 C H sing 1.09 N N
45 C11 H11A C H sing 1.09 N N
46 C11 H11B C H sing 1.09 N N
47 C12 H12 C H sing 1.09 N N
48 C13 H13 C H sing 1.09 N N
49 C13 H13A C H sing 1.09 N N
50 C14 H14 C H sing 1.09 N N
51 C14 H14A C H sing 1.09 N N
52 C14 H14B C H sing 1.09 N N
53 C15 H15 C H sing 1.09 N N
54 C15 H15A C H sing 1.09 N N
55 C2' H2' C H sing 1.08 N N
56 C2B H2B C H sing 1.08 N N
57 C3' H3' C H sing 1.08 N N
58 C3B H3B C H sing 1.08 N N
59 C4B H4B C H sing 1.08 N N
60 C5' H5' C H sing 1.08 N N
61 C5B H5B C H sing 1.08 N N
62 C6' H6' C H sing 1.08 N N
63 CA' HA' C H sing 1.09 N N
64 CA' HA'A C H sing 1.09 N N