Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SE8    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 C1 C C sing 1.51 N N
2 C1 O20 C O doub 1.21 N N
3 C1 O19 C O sing 1.34 N N
4 C3 C2 C C sing 1.53 N N
5 N21 C2 N C sing 1.47 N N
6 C2 H2 C H sing 1.09 N N
7 N4 C3 N C sing 1.47 N N
8 C3 H3 C H sing 1.09 N N
9 C3 H3A C H sing 1.09 N N
10 C5 N4 C N sing 1.35 N N
11 N4 HN4 N H sing 0.97 N N
12 O22 C5 O C doub 1.21 N N
13 C6 C5 C C sing 1.51 N N
14 C6 C7 C C sing 1.53 N N
15 C6 H6 C H sing 1.09 N N
16 C6 H6A C H sing 1.09 N N
17 C8 C7 C C sing 1.53 N N
18 C23 C7 C C sing 1.51 N N
19 C7 O26 C O sing 1.43 N N
20 C8 C9 C C sing 1.51 N N
21 C8 H8 C H sing 1.09 N N
22 C8 H8A C H sing 1.09 N N
23 O27 C9 O C doub 1.21 N N
24 C9 N10 C N sing 1.35 N N
25 N10 C11 N C sing 1.47 N N
26 N10 HN10 N H sing 0.97 N N
27 C11 C12 C C sing 1.53 N N
28 C11 H11 C H sing 1.09 N N
29 C11 H11A C H sing 1.09 N N
30 C12 N13 C N sing 1.47 N N
31 C12 H12 C H sing 1.09 N N
32 C12 H12A C H sing 1.09 N N
33 N13 C14 N C sing 1.35 N N
34 N13 HN13 N H sing 0.97 N N
35 C14 O28 C O doub 1.21 N N
36 C14 C15 C C sing 1.51 N N
37 C16 C15 C C sing 1.53 N N
38 C15 H15 C H sing 1.09 N N
39 C15 H15A C H sing 1.09 N N
40 C17 C16 C C sing 1.51 N N
41 C16 H16 C H sing 1.09 N N
42 C16 H16A C H sing 1.09 N N
43 O29 C17 O C doub 1.21 N N
44 C17 C18 C C sing 1.49 N N
45 O30 C18 O C doub 1.21 N N
46 C18 O31 C O sing 1.35 N N
47 O19 HO19 O H sing 0.97 N N
48 N21 HN21 N H sing 1.01 N N
49 N21 HN2A N H sing 1.01 N N
50 O24 C23 O C doub 1.21 N N
51 C23 O25 C O sing 1.34 N N
52 O25 HO25 O H sing 0.97 N N
53 O26 HO26 O H sing 0.97 N N
54 O31 HO31 O H sing 0.97 N N