Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SE8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 55


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 10.0 0.095 -0.053
2 C2 C C2 S N N 0 8.772 -0.756 -0.248
3 C3 C C3 N N N 0 7.526 0.132 -0.224
4 N4 N N4 N N N 0 6.327 -0.707 -0.293
5 C5 C C5 N N N 0 5.105 -0.138 -0.286
6 C6 C C6 N N N 0 3.872 -1.001 -0.358
7 C7 C C7 S N N 0 2.626 -0.113 -0.333
8 C8 C C8 N N N 0 1.374 -0.991 -0.28
9 C9 C C9 N N N 0 0.147 -0.116 -0.256
10 N10 N N10 N N N 0 -1.078 -0.675 -0.209
11 C11 C C11 N N N 0 -2.271 0.175 -0.185
12 C12 C C12 N N N 0 -3.522 -0.703 -0.132
13 N13 N N13 N N N 0 -4.715 0.147 -0.109
14 C14 C C14 N N N 0 -5.94 -0.412 -0.062
15 C15 C C15 N N N 0 -7.167 0.463 -0.038
16 C16 C C16 N N N 0 -8.419 -0.416 0.015
17 C17 C C17 N N N 0 -9.646 0.459 0.039
18 C18 C C18 N N N 0 -11.001 -0.159 0.091
19 O19 O O19 N N N 0 10.507 0.787 -1.085
20 O20 O O20 N N N 0 10.524 0.159 1.033
21 N21 N N21 N N N 0 8.687 -1.748 0.832
22 O22 O O22 N N N 0 4.999 1.068 -0.222
23 C23 C C23 N N N 0 2.667 0.777 0.882
24 O24 O O24 N N N 0 2.668 1.978 0.752
25 O25 O O25 N N N 0 2.703 0.235 2.11
26 O26 O O26 N N N 0 2.593 0.693 -1.513
27 O27 O O27 N N N 0 0.263 1.091 -0.279
28 O28 O O28 N N N 0 -6.056 -1.619 -0.039
29 O29 O O29 N N N 0 -9.531 1.661 0.016
30 O30 O O30 N N N 0 -11.116 -1.366 0.115
31 O31 O O31 N N N 0 -12.097 0.622 0.113
32 H2 H H2 N N N 0 8.834 -1.269 -1.208
33 H3 H H3 N N N 0 7.511 0.711 0.699
34 H3A H H3A N N N 0 7.546 0.809 -1.078
35 HN4 H HN4 N N N 0 6.412 -1.672 -0.345
36 H6 H H6 N N N 0 3.887 -1.58 -1.281
37 H6A H H6A N N N 0 3.852 -1.678 0.496
38 H8 H H8 N N N 0 1.345 -1.635 -1.159
39 H8A H H8A N N N 0 1.4 -1.606 0.619
40 HN10 H HN10 N N N 0 -1.17 -1.641 -0.191
41 H11 H H11 N N N 0 -2.241 0.818 0.694
42 H11A H H11A N N N 0 -2.296 0.79 -1.085
43 H12 H H12 N N N 0 -3.552 -1.347 -1.012
44 H12A H H12A N N N 0 -3.497 -1.318 0.767
45 HN13 H HN13 N N N 0 -4.623 1.112 -0.127
46 H15 H H15 N N N 0 -7.137 1.106 0.841
47 H15A H H15A N N N 0 -7.193 1.077 -0.937
48 H16 H H16 N N N 0 -8.449 -1.059 -0.864
49 H16A H H16A N N N 0 -8.393 -1.031 0.915
50 HO19 H HO19 N N N 0 11.293 1.322 -0.911
51 HN21 H HN21 N N N 0 9.467 -2.388 0.798
52 HN2A H HN2A N N N 0 8.629 -1.298 1.733
53 HO25 H HO25 N N N 0 2.729 0.846 2.859
54 HO26 H HO26 N N N 0 2.565 0.186 -2.335
55 HO31 H HO31 N N N 0 -12.954 0.175 0.147