Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SDM    

Bonds between two atoms of the molecule

Total Number of Bonds: 28


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C5 C6 C C sing 1.53 N N
2 C5 O C O sing 1.43 N N
3 O C4 O C sing 1.36 N N
4 N1 C N C sing 1.38 N N
5 C2 C3 C C sing 1.4 N Y
6 C2 C1 C C doub 1.33 N Y
7 C4 C3 C C doub 1.42 N Y
8 C4 C7 C C sing 1.38 N Y
9 C3 C10 C C sing 1.4 N Y
10 C C1 C C sing 1.47 N N
11 C N C N doub 1.31 N N
12 C7 C8 C C doub 1.39 N Y
13 C1 S C S sing 1.75 N Y
14 C10 S C S sing 1.76 N Y
15 C10 C9 C C doub 1.4 N Y
16 C8 C9 C C sing 1.37 N Y
17 C2 H2 C H sing 1.08 N N
18 C5 H3 C H sing 1.09 N N
19 C5 H4 C H sing 1.09 N N
20 C7 H8 C H sing 1.08 N N
21 C9 H10 C H sing 1.08 N N
22 N H N H sing 0.97 N N
23 C6 H5 C H sing 1.09 N N
24 C6 H6 C H sing 1.09 N N
25 C6 H7 C H sing 1.09 N N
26 C8 H9 C H sing 1.08 N N
27 N1 H12 N H sing 0.97 N N
28 N1 H11 N H sing 0.97 N N