Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : SDM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 27


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -1.898 0.373 0.003
2 C2 C C2 N Y N 0 -0.625 0.775 0.003
3 C3 C C3 N Y N 0 0.335 -0.25 0.002
4 C4 C C4 N Y N 0 1.75 -0.144 0.0
5 C5 C C5 N N N 0 3.765 1.117 -0.001
6 C C C8 N N N 0 -3.062 1.276 -0.001
7 C7 C C6 N Y N 0 2.531 -1.276 -0.002
8 C9 C C7 N Y N 0 0.576 -2.661 -0.001
9 N N N1 N N N 0 -2.884 2.569 0.0
10 O O O1 N N N 0 2.336 1.082 0.0
11 C10 C C9 N Y N 0 -0.24 -1.526 0.001
12 C6 C C10 N N N 0 4.239 2.572 0.0
13 C8 C C11 N Y N 0 1.945 -2.534 -0.003
14 N1 N N2 N N N 0 -4.339 0.755 -0.006
15 S S S1 N Y N 0 -1.994 -1.379 0.002
16 H2 H H1 N N N 0 -0.352 1.82 0.003
17 H3 H H2 N N N 0 4.142 0.613 0.888
18 H4 H H3 N N N 0 4.14 0.613 -0.891
19 H8 H H4 N N N 0 3.607 -1.186 -0.002
20 H10 H H5 N N N 0 0.128 -3.644 -0.001
21 H H H6 N N N 0 -1.986 2.936 0.004
22 H5 H H7 N N N 0 5.328 2.6 -0.001
23 H6 H H8 N N N 0 3.862 3.078 -0.89
24 H7 H H9 N N N 0 3.863 3.076 0.89
25 H9 H H10 N N N 0 2.567 -3.417 -0.004
26 H12 H H11 N N N 0 -4.471 -0.206 -0.006
27 H11 H H12 N N N 0 -5.106 1.349 -0.008