Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : SAD    

Bonds between two atoms of the molecule

Total Number of Bonds: 74


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PA O1A P O doub 1.48 N N
2 PA O2A P O sing 1.61 N N
3 PA O5B P O sing 1.61 N N
4 PA C3 P C sing 1.82 N N
5 O2A HOA2 O H sing 0.97 N N
6 O5B C5B O C sing 1.43 N N
7 C5B C4B C C sing 1.53 N N
8 C5B H51A C H sing 1.09 N N
9 C5B H52A C H sing 1.09 N N
10 C4B O4B C O sing 1.44 N N
11 C4B C3B C C sing 1.54 N N
12 C4B H4B C H sing 1.09 N N
13 O4B C1B O C sing 1.44 N N
14 C3B O3B C O sing 1.43 N N
15 C3B C2B C C sing 1.55 N N
16 C3B H3B C H sing 1.09 N N
17 O3B HO3A O H sing 0.97 N N
18 C2B O2B C O sing 1.43 N N
19 C2B C1B C C sing 1.55 N N
20 C2B H2B C H sing 1.09 N N
21 O2B HO2A O H sing 0.97 N N
22 C1B N9A C N sing 1.46 N N
23 C1B H1B C H sing 1.09 N N
24 N9A C8A N C sing 1.36 N Y
25 N9A C4A N C sing 1.37 N Y
26 C8A N7A C N doub 1.3 N Y
27 C8A H8A C H sing 1.08 N N
28 N7A C5A N C sing 1.36 N Y
29 C5A C6A C C sing 1.41 N Y
30 C5A C4A C C doub 1.4 N Y
31 C6A N6A C N sing 1.38 N N
32 C6A N1A C N doub 1.33 N Y
33 N6A H61A N H sing 0.97 N N
34 N6A H62A N H sing 0.97 N N
35 N1A C2A N C sing 1.32 N Y
36 C2A N3A C N doub 1.32 N Y
37 C2A H2A C H sing 1.08 N N
38 N3A C4A N C sing 1.33 N Y
39 C3 PN C P sing 1.82 N N
40 C3 H31 C H sing 1.09 N N
41 C3 H32 C H sing 1.09 N N
42 PN O1N P O doub 1.48 N N
43 PN O2N P O sing 1.61 N N
44 PN O5D P O sing 1.61 N N
45 O2N HON2 O H sing 0.97 N N
46 O5D C5D O C sing 1.43 N N
47 C5D C4D C C sing 1.53 N N
48 C5D H51N C H sing 1.09 N N
49 C5D H52N C H sing 1.09 N N
50 C4D O4D C O sing 1.44 N N
51 C4D C3D C C sing 1.55 N N
52 C4D H4D C H sing 1.09 N N
53 O4D C1D O C sing 1.44 N N
54 C3D O3D C O sing 1.43 N N
55 C3D C2D C C sing 1.55 N N
56 C3D H3D C H sing 1.09 N N
57 O3D HO3N O H sing 0.97 N N
58 C2D O2D C O sing 1.43 N N
59 C2D C1D C C sing 1.54 N N
60 C2D H2D C H sing 1.09 N N
61 O2D HO2N O H sing 0.97 N N
62 C1D C2N C C sing 1.51 N N
63 C1D H1D C H sing 1.09 N N
64 C2N N3N C N doub 1.32 N Y
65 C2N SE1N C SE sing 1.99 N Y
66 N3N C4N N C sing 1.34 N Y
67 C4N C5N C C doub 1.37 N Y
68 C4N C6N C C sing 1.48 N N
69 C5N SE1N C SE sing 2.0 N Y
70 C5N HN5 C H sing 1.08 N N
71 C6N O6N C O doub 1.22 N N
72 C6N N6N C N sing 1.35 N N
73 N6N H61N N H sing 0.97 N N
74 N6N H62N N H sing 0.97 N N