Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : SAD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 70


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P AP R N N 0 0.162 1.549 -1.759
2 O1A O AO1 N N N 0 -1.11 2.124 -2.247
3 O2A O AO2 N N N 0 1.131 2.734 -1.26
4 O5B O AO5* N N N 0 0.877 0.739 -2.953
5 C5B C AC5* N N N 0 1.115 1.677 -4.004
6 C4B C AC4* R N N 0 1.797 0.967 -5.176
7 O4B O AO4* N N N 0 0.937 -0.063 -5.69
8 C3B C AC3* R N N 0 2.05 1.969 -6.319
9 O3B O AO3* N N N 0 3.446 2.066 -6.608
10 C2B C AC2* S N N 0 1.287 1.363 -7.527
11 O2B O AO2* N N N 0 2.048 1.497 -8.729
12 C1B C AC1* R N N 0 1.159 -0.125 -7.116
13 N9A N AN9 N Y N 0 0.019 -0.752 -7.788
14 C8A C AC8 N Y N 0 -1.276 -0.738 -7.363
15 N7A N AN7 N Y N 0 -2.026 -1.393 -8.201
16 C5A C AC5 N Y N 0 -1.262 -1.867 -9.215
17 C6A C AC6 N Y N 0 -1.514 -2.622 -10.373
18 N6A N AN6 N N N 0 -2.796 -3.049 -10.674
19 N1A N AN1 N Y N 0 -0.494 -2.917 -11.172
20 C2A C AC2 N Y N 0 0.731 -2.513 -10.892
21 N3A N AN3 N Y N 0 1.014 -1.804 -9.819
22 C4A C AC4 N Y N 0 0.058 -1.457 -8.965
23 C3 C C3 N N N 0 -0.174 0.415 -0.372
24 PN P NP S N N 0 -0.984 1.333 0.978
25 O1N O NO1 N N N 0 -2.257 1.908 0.49
26 O2N O NO2 N N N 0 -0.016 2.518 1.478
27 O5D O NO5* N N N 0 -1.282 0.331 2.203
28 C5D C NC5* N N N 0 -1.914 1.106 3.225
29 C4D C NC4* R N N 0 -2.226 0.209 4.425
30 O4D O NO4* N N N 0 -1.007 -0.338 4.974
31 C3D C NC3* S N N 0 -2.839 1.039 5.575
32 O3D O NO3* N N N 0 -4.263 0.922 5.572
33 C2D C NC2* S N N 0 -2.244 0.406 6.854
34 O2D O NO2* N N N 0 -3.283 -0.119 7.683
35 C1D C NC1* R N N 0 -1.34 -0.728 6.324
36 C2N C NC2 N Y N 0 -0.092 -0.839 7.161
37 N3N N NN3 N Y N 0 0.405 -1.844 7.851
38 C4N C NC4 N Y N 0 1.531 -1.851 8.577
39 C5N C NC5 N Y N 0 2.379 -0.781 8.712
40 SE1N SE NSE1 N Y N 0 1.341 0.486 7.572
41 C6N C NC6 N N N 0 1.888 -3.103 9.277
42 O6N O NO6 N N N 0 1.167 -4.077 9.186
43 N6N N NN6 N N N 0 3.013 -3.164 10.016
44 HOA2 H 2HOA N N N 0 1.947 2.317 -0.951
45 H51A H AH51 N N N 0 0.166 2.098 -4.337
46 H52A H AH52 N N N 0 1.759 2.476 -3.639
47 H4B H AH4* N N N 0 2.741 0.533 -4.848
48 H3B H AH3* N N N 0 1.645 2.948 -6.065
49 HO3A H AHO3 N N N 0 3.534 2.658 -7.367
50 H2B H AH2* N N N 0 0.305 1.822 -7.638
51 HO2A H AHO2 N N N 0 2.091 2.442 -8.929
52 H1B H AH1* N N N 0 2.079 -0.665 -7.338
53 H8A H AH8 N N N 0 -1.627 -0.256 -6.463
54 H61A H AH61 N N N 0 -2.957 -3.57 -11.477
55 H62A H AH62 N N N 0 -3.532 -2.827 -10.084
56 H2A H AH2 N N N 0 1.531 -2.775 -11.568
57 H31 H 1H3 N N N 0 0.762 -0.008 -0.013
58 H51N H NH51 N N N 0 -2.84 1.531 2.839
59 H32 H 2H3 N N N 0 -0.83 -0.386 -0.71
60 HON2 H 2HON N N N 0 0.799 2.101 1.786
61 H52N H NH52 N N N 0 -1.247 1.91 3.536
62 H4D H NH4* N N N 0 -2.904 -0.592 4.132
63 H3D H NH3* N N N 0 -2.542 2.084 5.491
64 HO3N H NHO3 N N N 0 -4.588 1.458 6.308
65 H2D H NH2* N N N 0 -1.652 1.138 7.404
66 HO2N H NHO2 N N N 0 -2.855 -0.499 8.462
67 H1D H NH1* N N N 0 -1.881 -1.675 6.323
68 HN5 H HN5 N N N 0 3.304 -0.664 9.257
69 H61N H NH61 N N N 0 3.247 -3.986 10.476
70 H62N H NH62 N N N 0 3.591 -2.388 10.086