Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : S5D    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.38 N Y
2 C1 C6 C C sing 1.38 N Y
3 C2 C3 C C sing 1.38 N Y
4 C2 C19 C C sing 1.51 N N
5 C3 C4 C C doub 1.38 N Y
6 C4 C5 C C sing 1.38 N Y
7 C5 C6 C C doub 1.38 N Y
8 C6 C29 C C sing 1.51 N N
9 N11 C12 N C doub 1.32 N Y
10 N11 C16 N C sing 1.32 N Y
11 C12 N12 C N sing 1.39 N N
12 C12 C13 C C sing 1.39 N Y
13 C13 C14 C C doub 1.38 N Y
14 C14 C15 C C sing 1.39 N Y
15 C14 C17 C C sing 1.51 N N
16 C15 C16 C C doub 1.38 N Y
17 C16 C18 C C sing 1.51 N N
18 C18 C19 C C sing 1.53 N N
19 N21 C22 N C doub 1.32 N Y
20 N21 C26 N C sing 1.32 N Y
21 C22 N22 C N sing 1.39 N N
22 C22 C23 C C sing 1.39 N Y
23 C23 C24 C C doub 1.38 N Y
24 C24 C25 C C sing 1.39 N Y
25 C24 C27 C C sing 1.51 N N
26 C25 C26 C C doub 1.38 N Y
27 C26 C28 C C sing 1.51 N N
28 C28 C29 C C sing 1.53 N N
29 C29 N29 C N sing 1.47 N N
30 C1 H1 C H sing 1.08 N N
31 C3 H3 C H sing 1.08 N N
32 C4 H4 C H sing 1.08 N N
33 C5 H5 C H sing 1.08 N N
34 N12 HN12 N H sing 0.97 N N
35 N12 HN1A N H sing 0.97 N N
36 C13 H13 C H sing 1.08 N N
37 C15 H15 C H sing 1.08 N N
38 C17 H17 C H sing 1.09 N N
39 C17 H17A C H sing 1.09 N N
40 C17 H17B C H sing 1.09 N N
41 C18 H18 C H sing 1.09 N N
42 C18 H18A C H sing 1.09 N N
43 C19 H19 C H sing 1.09 N N
44 C19 H19A C H sing 1.09 N N
45 N22 HN22 N H sing 0.97 N N
46 N22 HN2A N H sing 0.97 N N
47 C23 H23 C H sing 1.08 N N
48 C25 H25 C H sing 1.08 N N
49 C27 H27 C H sing 1.09 N N
50 C27 H27A C H sing 1.09 N N
51 C27 H27B C H sing 1.09 N N
52 C28 H28 C H sing 1.09 N N
53 C28 H28A C H sing 1.09 N N
54 C29 H29 C H sing 1.09 N N
55 N29 HN29 N H sing 1.01 N N
56 N29 HN2B N H sing 1.01 N N