data_S5D
#
_chem_comp.id S5D
_chem_comp.name (R)-6-(2-Amino-2-(3-(2-(6-amino-4-methylpyridin-2-yl)ethyl)phenyl)ethyl)-4-methylpyridin-2-amine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H27 N5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-03-17
_chem_comp.pdbx_modified_date 2014-05-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 361.483
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S5D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4CTQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S5D C1 C1 C 0 1 Y N N N N N 16.318 3.811 56.879 -0.131 0.846 -0.103 C1 S5D 1
S5D C2 C2 C 0 1 Y N N N N N 16.035 2.757 57.734 -1.293 1.533 -0.399 C2 S5D 2
S5D C3 C3 C 0 1 Y N N N N N 17.091 1.964 58.238 -1.281 2.914 -0.467 C3 S5D 3
S5D C4 C4 C 0 1 Y N N N N N 18.413 2.227 57.858 -0.108 3.607 -0.238 C4 S5D 4
S5D C5 C5 C 0 1 Y N N N N N 18.697 3.271 56.989 1.054 2.920 0.060 C5 S5D 5
S5D C6 C6 C 0 1 Y N N N N N 17.652 4.058 56.495 1.043 1.540 0.126 C6 S5D 6
S5D N11 N11 N 0 1 Y N N N N N 12.307 -0.403 58.385 -5.461 0.289 -0.470 N11 S5D 7
S5D C12 C12 C 0 1 Y N N N N N 11.089 -0.842 58.811 -6.597 -0.343 -0.721 C12 S5D 8
S5D N12 N12 N 0 1 N N N N N N 10.616 -1.942 58.202 -7.475 0.169 -1.670 N12 S5D 9
S5D C13 C13 C 0 1 Y N N N N N 10.403 -0.186 59.851 -6.920 -1.516 -0.045 C13 S5D 10
S5D C14 C14 C 0 1 Y N N N N N 11.014 0.943 60.419 -6.038 -2.014 0.896 C14 S5D 11
S5D C15 C15 C 0 1 Y N N N N N 12.282 1.352 59.948 -4.857 -1.321 1.130 C15 S5D 12
S5D C16 C16 C 0 1 Y N N N N N 12.942 0.667 58.915 -4.601 -0.164 0.423 C16 S5D 13
S5D C17 C17 C 0 1 N N N N N N 10.343 1.729 61.529 -6.351 -3.281 1.650 C17 S5D 14
S5D C18 C18 C 0 1 N N N N N N 14.361 1.019 58.366 -3.321 0.592 0.672 C18 S5D 15
S5D C19 C19 C 0 1 N N N N N N 14.584 2.504 58.107 -2.572 0.777 -0.649 C19 S5D 16
S5D N21 N21 N 0 1 Y N N N N N 17.274 8.285 55.502 5.174 0.146 0.490 N21 S5D 17
S5D C22 C22 C 0 1 Y N N N N N 17.210 9.460 54.838 6.246 -0.575 0.782 C22 S5D 18
S5D N22 N22 N 0 1 N N N N N N 16.003 10.060 54.688 7.052 -0.208 1.853 N22 S5D 19
S5D C23 C23 C 0 1 Y N N N N N 18.395 10.044 54.341 6.572 -1.697 0.027 C23 S5D 20
S5D C24 C24 C 0 1 Y N N N N N 19.619 9.391 54.530 5.761 -2.052 -1.036 C24 S5D 21
S5D C25 C25 C 0 1 Y N N N N N 19.650 8.180 55.225 4.646 -1.269 -1.309 C25 S5D 22
S5D C26 C26 C 0 1 Y N N N N N 18.447 7.644 55.694 4.382 -0.169 -0.518 C26 S5D 23
S5D C27 C27 C 0 1 N N N N N N 20.894 10.008 54.004 6.079 -3.259 -1.879 C27 S5D 24
S5D C28 C28 C 0 1 N N N N N N 18.423 6.341 56.466 3.175 0.684 -0.809 C28 S5D 25
S5D C29 C29 C 0 1 N N R N N N 17.945 5.190 55.579 2.311 0.791 0.449 C29 S5D 26
S5D N29 N29 N 0 1 N N N N N N 19.013 4.844 54.660 3.052 1.511 1.493 N29 S5D 27
S5D H1 H1 H 0 1 N N N N N N 15.521 4.439 56.509 -0.140 -0.232 -0.045 H1 S5D 28
S5D H3 H3 H 0 1 N N N N N N 16.878 1.153 58.918 -2.189 3.451 -0.699 H3 S5D 29
S5D H4 H4 H 0 1 N N N N N N 19.215 1.615 58.243 -0.099 4.686 -0.291 H4 S5D 30
S5D H5 H5 H 0 1 N N N N N N 19.717 3.474 56.697 1.971 3.462 0.238 H5 S5D 31
S5D HN12 HN12 H 0 0 N N N N N N 11.274 -2.253 57.516 -7.254 0.986 -2.144 HN12 S5D 32
S5D HN1A HN1A H 0 0 N N N N N N 10.476 -2.664 58.880 -8.308 -0.290 -1.858 HN1A S5D 33
S5D H13 H13 H 0 1 N N N N N N 9.443 -0.538 60.199 -7.848 -2.029 -0.252 H13 S5D 34
S5D H15 H15 H 0 1 N N N N N N 12.756 2.214 60.394 -4.147 -1.684 1.859 H15 S5D 35
S5D H17 H17 H 0 1 N N N N N N 10.639 1.314 62.504 -5.958 -4.137 1.102 H17 S5D 36
S5D H17A H17A H 0 0 N N N N N N 10.652 2.783 61.470 -5.889 -3.239 2.637 H17A S5D 37
S5D H17B H17B H 0 0 N N N N N N 9.251 1.660 61.418 -7.431 -3.382 1.758 H17B S5D 38
S5D H18 H18 H 0 1 N N N N N N 15.108 0.682 59.100 -3.553 1.568 1.098 H18 S5D 39
S5D H18A H18A H 0 0 N N N N N N 14.508 0.479 57.419 -2.698 0.031 1.368 H18A S5D 40
S5D H19 H19 H 0 1 N N N N N N 14.337 3.073 59.016 -3.196 1.338 -1.345 H19 S5D 41
S5D H19A H19A H 0 0 N N N N N N 13.934 2.831 57.282 -2.340 -0.199 -1.074 H19A S5D 42
S5D HN22 HN22 H 0 0 N N N N N N 15.296 9.501 55.122 6.828 0.573 2.383 HN22 S5D 43
S5D HN2A HN2A H 0 0 N N N N N N 16.024 10.963 55.117 7.838 -0.733 2.071 HN2A S5D 44
S5D H23 H23 H 0 1 N N N N N N 18.358 10.988 53.818 7.447 -2.283 0.267 H23 S5D 45
S5D H25 H25 H 0 1 N N N N N N 20.585 7.668 55.397 3.993 -1.518 -2.132 H25 S5D 46
S5D H27 H27 H 0 1 N N N N N N 21.328 10.666 54.772 5.591 -4.137 -1.456 H27 S5D 47
S5D H27A H27A H 0 0 N N N N N N 21.611 9.212 53.756 5.719 -3.098 -2.895 H27A S5D 48
S5D H27B H27B H 0 0 N N N N N N 20.672 10.595 53.101 7.158 -3.416 -1.896 H27B S5D 49
S5D H28 H28 H 0 1 N N N N N N 19.437 6.119 56.829 3.498 1.679 -1.113 H28 S5D 50
S5D H28A H28A H 0 0 N N N N N N 17.741 6.443 57.323 2.594 0.229 -1.611 H28A S5D 51
S5D H29 H29 H 0 1 N N N N N N 17.038 5.490 55.034 2.061 -0.209 0.805 H29 S5D 52
S5D HN29 HN29 H 0 0 N N N N N N 19.195 5.618 54.053 3.874 0.996 1.773 HN29 S5D 53
S5D HN2B HN2B H 0 0 N N N N N N 19.840 4.625 55.178 3.295 2.441 1.187 HN2B S5D 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S5D C1 C2 DOUB Y N 1
S5D C1 C6 SING Y N 2
S5D C2 C3 SING Y N 3
S5D C2 C19 SING N N 4
S5D C3 C4 DOUB Y N 5
S5D C4 C5 SING Y N 6
S5D C5 C6 DOUB Y N 7
S5D C6 C29 SING N N 8
S5D N11 C12 DOUB Y N 9
S5D N11 C16 SING Y N 10
S5D C12 N12 SING N N 11
S5D C12 C13 SING Y N 12
S5D C13 C14 DOUB Y N 13
S5D C14 C15 SING Y N 14
S5D C14 C17 SING N N 15
S5D C15 C16 DOUB Y N 16
S5D C16 C18 SING N N 17
S5D C18 C19 SING N N 18
S5D N21 C22 DOUB Y N 19
S5D N21 C26 SING Y N 20
S5D C22 N22 SING N N 21
S5D C22 C23 SING Y N 22
S5D C23 C24 DOUB Y N 23
S5D C24 C25 SING Y N 24
S5D C24 C27 SING N N 25
S5D C25 C26 DOUB Y N 26
S5D C26 C28 SING N N 27
S5D C28 C29 SING N N 28
S5D C29 N29 SING N N 29
S5D C1 H1 SING N N 30
S5D C3 H3 SING N N 31
S5D C4 H4 SING N N 32
S5D C5 H5 SING N N 33
S5D N12 HN12 SING N N 34
S5D N12 HN1A SING N N 35
S5D C13 H13 SING N N 36
S5D C15 H15 SING N N 37
S5D C17 H17 SING N N 38
S5D C17 H17A SING N N 39
S5D C17 H17B SING N N 40
S5D C18 H18 SING N N 41
S5D C18 H18A SING N N 42
S5D C19 H19 SING N N 43
S5D C19 H19A SING N N 44
S5D N22 HN22 SING N N 45
S5D N22 HN2A SING N N 46
S5D C23 H23 SING N N 47
S5D C25 H25 SING N N 48
S5D C27 H27 SING N N 49
S5D C27 H27A SING N N 50
S5D C27 H27B SING N N 51
S5D C28 H28 SING N N 52
S5D C28 H28A SING N N 53
S5D C29 H29 SING N N 54
S5D N29 HN29 SING N N 55
S5D N29 HN2B SING N N 56
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S5D SMILES ACDLabs 12.01 n1c(N)cc(cc1CCc2cccc(c2)C(N)Cc3nc(N)cc(c3)C)C
S5D InChI InChI 1.03 InChI=1S/C22H27N5/c1-14-8-18(26-21(24)10-14)7-6-16-4-3-5-17(12-16)20(23)13-19-9-15(2)11-22(25)27-19/h3-5,8-12,20H,6-7,13,23H2,1-2H3,(H2,24,26)(H2,25,27)/t20-/m1/s1
S5D InChIKey InChI 1.03 HPGDXHOKQNTRIC-HXUWFJFHSA-N
S5D SMILES_CANONICAL CACTVS 3.385 Cc1cc(N)nc(CCc2cccc(c2)[C@H](N)Cc3cc(C)cc(N)n3)c1
S5D SMILES CACTVS 3.385 Cc1cc(N)nc(CCc2cccc(c2)[CH](N)Cc3cc(C)cc(N)n3)c1
S5D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1cc(nc(c1)N)CCc2cccc(c2)[C@@H](Cc3cc(cc(n3)N)C)N
S5D SMILES "OpenEye OEToolkits" 1.7.6 Cc1cc(nc(c1)N)CCc2cccc(c2)C(Cc3cc(cc(n3)N)C)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S5D "SYSTEMATIC NAME" ACDLabs 12.01 6-[(2R)-2-amino-2-{3-[2-(6-amino-4-methylpyridin-2-yl)ethyl]phenyl}ethyl]-4-methylpyridin-2-amine
S5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 6-[2-[3-[(1R)-1-azanyl-2-(6-azanyl-4-methyl-pyridin-2-yl)ethyl]phenyl]ethyl]-4-methyl-pyridin-2-amine
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S5D 'Create component' 2014-03-17 EBI
S5D 'Other modification' 2014-03-20 EBI
S5D 'Initial release' 2014-05-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S5D C1 C 12.093 -0.608 1
S5D C2 C 10.794 -1.357 2
S5D C3 C 10.794 -2.857 3
S5D C4 C 12.093 -3.607 4
S5D C5 C 13.392 -2.857 5
S5D C6 C 13.392 -1.357 6
S5D N11 N 6.897 0.892 7
S5D C12 C 5.598 1.643 8
S5D N12 N 5.598 3.143 9
S5D C13 C 4.299 0.892 10
S5D C14 C 4.299 -0.608 11
S5D C15 C 5.598 -1.357 12
S5D C16 C 6.897 -0.608 13
S5D C17 C 3.000 -1.357 14
S5D C18 C 8.196 -1.357 15
S5D C19 C 9.495 -0.608 16
S5D N21 N 18.588 -1.357 17
S5D C22 C 19.887 -0.608 18
S5D N22 N 21.187 -1.357 19
S5D C23 C 19.887 0.892 20
S5D C24 C 18.588 1.643 21
S5D C25 C 17.290 0.892 22
S5D C26 C 17.290 -0.608 23
S5D C27 C 18.588 3.143 24
S5D C28 C 15.990 -1.357 25
S5D C29 C 14.691 -0.608 26
S5D N29 N 14.691 0.892 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S5D C1 C2 DOUBLE NONE 1
S5D C1 C6 SINGLE NONE 2
S5D C2 C3 SINGLE NONE 3
S5D C2 C19 SINGLE NONE 4
S5D C3 C4 DOUBLE NONE 5
S5D C4 C5 SINGLE NONE 6
S5D C5 C6 DOUBLE NONE 7
S5D C6 C29 SINGLE NONE 8
S5D N11 C12 DOUBLE NONE 9
S5D N11 C16 SINGLE NONE 10
S5D C12 N12 SINGLE NONE 11
S5D C12 C13 SINGLE NONE 12
S5D C13 C14 DOUBLE NONE 13
S5D C14 C15 SINGLE NONE 14
S5D C14 C17 SINGLE NONE 15
S5D C15 C16 DOUBLE NONE 16
S5D C16 C18 SINGLE NONE 17
S5D C18 C19 SINGLE NONE 18
S5D N21 C22 DOUBLE NONE 19
S5D N21 C26 SINGLE NONE 20
S5D C22 N22 SINGLE NONE 21
S5D C22 C23 SINGLE NONE 22
S5D C23 C24 DOUBLE NONE 23
S5D C24 C25 SINGLE NONE 24
S5D C24 C27 SINGLE NONE 25
S5D C25 C26 DOUBLE NONE 26
S5D C26 C28 SINGLE NONE 27
S5D C28 C29 SINGLE NONE 28
S5D C29 N29 SINGLE BEGINDASH 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S5D MurckoScaffold S1 scaffold c1ccc(CCc2cccc(CCc3ccccn3)c2)nc1 InChI=1S/C20H20N2/c1-3-14-21-19(8-1)12-10-17-6-5-7-18(16-17)11-13-20-9-2-4-15-22-20/h1-9,14-16H,10-13H2 ZYYNPKNSAKVCDQ-UHFFFAOYSA-N
S5D phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
S5D pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S5D C1 S1 1
S5D C2 S1 1
S5D C3 S1 1
S5D C4 S1 1
S5D C5 S1 1
S5D C6 S1 1
S5D N11 S1 1
S5D C12 S1 1
S5D C13 S1 1
S5D C14 S1 1
S5D C15 S1 1
S5D C16 S1 1
S5D C18 S1 1
S5D C19 S1 1
S5D N21 S1 1
S5D C22 S1 1
S5D C23 S1 1
S5D C24 S1 1
S5D C25 S1 1
S5D C26 S1 1
S5D C28 S1 1
S5D C29 S1 1
S5D C1 F1 1
S5D C2 F1 1
S5D C3 F1 1
S5D C4 F1 1
S5D C5 F1 1
S5D C6 F1 1
S5D C12 F2 1
S5D C13 F2 1
S5D C14 F2 1
S5D C15 F2 1
S5D C16 F2 1
S5D N11 F2 1
S5D C22 F2 2
S5D C23 F2 2
S5D C24 F2 2
S5D C25 F2 2
S5D C26 F2 2
S5D N21 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id S5D
_pdbe_chem_comp_rdkit_properties.exactmw 361.227
_pdbe_chem_comp_rdkit_properties.amw 361.493
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 198.477
_pdbe_chem_comp_rdkit_properties.tpsa 103.840
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.196
_pdbe_chem_comp_rdkit_properties.CrippenMR 108.011
_pdbe_chem_comp_rdkit_properties.chi0v 13.236
_pdbe_chem_comp_rdkit_properties.chi1v 7.065
_pdbe_chem_comp_rdkit_properties.chi2v 2.800
_pdbe_chem_comp_rdkit_properties.chi3v 2.800
_pdbe_chem_comp_rdkit_properties.chi4v 1.786
_pdbe_chem_comp_rdkit_properties.chi0n 40.236
_pdbe_chem_comp_rdkit_properties.chi1n 20.249
_pdbe_chem_comp_rdkit_properties.chi2n 2.800
_pdbe_chem_comp_rdkit_properties.chi3n 2.800
_pdbe_chem_comp_rdkit_properties.chi4n 1.786
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.920
_pdbe_chem_comp_rdkit_properties.kappa1 4.553
_pdbe_chem_comp_rdkit_properties.kappa2 8.184
_pdbe_chem_comp_rdkit_properties.kappa3 5.278
_pdbe_chem_comp_rdkit_properties.Phi 1.380
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S5D UniChem ZINC ZINC000098209389
S5D UniChem SureChEMBL SCHEMBL17708588
S5D UniChem PubChem 73659113
S5D UniChem BindingDb 50014709
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S5D C1 0.221 0.956 -1.009 ETKDGv3 1
S5D C2 1.373 1.651 -0.991 ETKDGv3 2
S5D C3 1.329 3.133 -0.984 ETKDGv3 3
S5D C4 0.155 3.772 -1.012 ETKDGv3 4
S5D C5 -1.107 3.006 -1.045 ETKDGv3 5
S5D C6 -1.086 1.660 -1.055 ETKDGv3 6
S5D N11 5.610 0.789 0.739 ETKDGv3 7
S5D C12 6.792 0.243 0.773 ETKDGv3 8
S5D N12 7.954 1.068 0.865 ETKDGv3 9
S5D C13 6.925 -1.228 0.709 ETKDGv3 10
S5D C14 5.823 -1.989 0.631 ETKDGv3 11
S5D C15 4.495 -1.337 0.576 ETKDGv3 12
S5D C16 4.409 0.002 0.645 ETKDGv3 13
S5D C17 5.934 -3.481 0.522 ETKDGv3 14
S5D C18 3.081 0.696 0.558 ETKDGv3 15
S5D C19 2.697 0.941 -0.904 ETKDGv3 16
S5D N21 -3.855 -1.441 0.704 ETKDGv3 17
S5D C22 -4.788 -2.345 0.793 ETKDGv3 18
S5D N22 -4.437 -3.710 1.016 ETKDGv3 19
S5D C23 -6.208 -1.953 0.658 ETKDGv3 20
S5D C24 -6.522 -0.664 0.460 ETKDGv3 21
S5D C25 -5.437 0.337 0.347 ETKDGv3 22
S5D C26 -4.157 -0.052 0.477 ETKDGv3 23
S5D C27 -7.951 -0.248 0.277 ETKDGv3 24
S5D C28 -3.027 0.930 0.342 ETKDGv3 25
S5D C29 -2.371 0.856 -1.051 ETKDGv3 26
S5D N29 -3.285 1.353 -2.084 ETKDGv3 27
S5D H1 0.242 -0.127 -0.983 ETKDGv3 28
S5D H3 2.249 3.703 -0.952 ETKDGv3 29
S5D H4 0.126 4.854 -1.004 ETKDGv3 30
S5D H5 -2.045 3.546 -1.054 ETKDGv3 31
S5D HN12 7.862 2.107 0.907 ETKDGv3 32
S5D HN1A 8.907 0.643 0.891 ETKDGv3 33
S5D H13 7.910 -1.680 0.724 ETKDGv3 34
S5D H15 3.601 -1.941 0.476 ETKDGv3 35
S5D H17 6.153 -3.760 -0.530 ETKDGv3 36
S5D H17A 4.985 -3.967 0.833 ETKDGv3 37
S5D H17B 6.746 -3.861 1.178 ETKDGv3 38
S5D H18 2.297 0.086 1.059 ETKDGv3 39
S5D H18A 3.145 1.668 1.094 ETKDGv3 40
S5D H19 2.645 -0.028 -1.449 ETKDGv3 41
S5D H19A 3.481 1.557 -1.398 ETKDGv3 42
S5D HN22 -3.435 -3.990 1.110 ETKDGv3 43
S5D HN2A -5.175 -4.445 1.088 ETKDGv3 44
S5D H23 -6.982 -2.709 0.717 ETKDGv3 45
S5D H25 -5.680 1.375 0.153 ETKDGv3 46
S5D H27 -8.614 -0.816 0.964 ETKDGv3 47
S5D H27A -8.074 0.834 0.495 ETKDGv3 48
S5D H27B -8.261 -0.441 -0.772 ETKDGv3 49
S5D H28 -2.269 0.687 1.119 ETKDGv3 50
S5D H28A -3.379 1.967 0.543 ETKDGv3 51
S5D H29 -2.128 -0.209 -1.273 ETKDGv3 52
S5D HN29 -2.790 1.317 -3.005 ETKDGv3 53
S5D HN2B -4.086 0.686 -2.170 ETKDGv3 54
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