Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : S53    

Bonds between two atoms of the molecule

Total Number of Bonds: 73


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.32 N Y
2 N1 C6 N C sing 1.32 N Y
3 C23 C2 C C sing 1.51 N N
4 C2 C3 C C sing 1.39 N Y
5 C3 C4 C C doub 1.41 N Y
6 C3 N9 C N sing 1.38 N Y
7 C5 C4 C C sing 1.39 N Y
8 C4 C11 C C sing 1.47 N Y
9 C6 C5 C C doub 1.37 N Y
10 C5 H5 C H sing 1.08 N N
11 C6 H6 C H sing 1.08 N N
12 C12 N9 C N sing 1.4 N N
13 N9 C10 N C sing 1.36 N Y
14 C11 C10 C C doub 1.39 N Y
15 C10 O37 C O sing 1.35 N N
16 C11 C52 C C sing 1.46 N N
17 C13 C12 C C doub 1.39 N Y
18 C12 C17 C C sing 1.39 N Y
19 C14 C13 C C sing 1.38 N Y
20 C13 H13 C H sing 1.08 N N
21 C14 C15 C C doub 1.38 N Y
22 C14 H14 C H sing 1.08 N N
23 C15 C16 C C sing 1.38 N Y
24 C15 H15 C H sing 1.08 N N
25 C16 C17 C C doub 1.38 N Y
26 C16 H16 C H sing 1.08 N N
27 C17 H17 C H sing 1.08 N N
28 C24 C23 C C sing 1.51 N N
29 C23 H23 C H sing 1.09 N N
30 C23 H23A C H sing 1.09 N N
31 C31 C24 C C doub 1.38 N Y
32 C27 C24 C C sing 1.38 N Y
33 C28 C27 C C doub 1.38 N Y
34 C27 H27 C H sing 1.08 N N
35 C29 C28 C C sing 1.38 N Y
36 C28 H28 C H sing 1.08 N N
37 C29 C30 C C doub 1.38 N Y
38 C29 H29 C H sing 1.08 N N
39 C30 C31 C C sing 1.38 N Y
40 C30 H30 C H sing 1.08 N N
41 C31 H31 C H sing 1.08 N N
42 O37 C38 O C sing 1.36 N N
43 C38 C43 C C doub 1.39 N Y
44 C38 C39 C C sing 1.39 N Y
45 C39 C40 C C doub 1.38 N Y
46 C39 H39 C H sing 1.08 N N
47 C40 F51 C F sing 1.35 N N
48 C40 C41 C C sing 1.39 N Y
49 C42 C41 C C doub 1.38 N Y
50 C41 H41 C H sing 1.08 N N
51 C43 C42 C C sing 1.38 N Y
52 C42 H42 C H sing 1.08 N N
53 C47 C43 C C sing 1.51 N N
54 C47 H47 C H sing 1.09 N N
55 C47 H47A C H sing 1.09 N N
56 C47 H47B C H sing 1.09 N N
57 O54 C52 O C doub 1.22 N N
58 C52 N53 C N sing 1.35 N N
59 N53 C55 N C sing 1.47 N N
60 N53 C59 N C sing 1.47 N N
61 C55 C56 C C sing 1.53 N N
62 C55 H55 C H sing 1.09 N N
63 C55 H55A C H sing 1.09 N N
64 C56 N57 C N sing 1.47 N N
65 C56 H56 C H sing 1.09 N N
66 C56 H56A C H sing 1.09 N N
67 C58 N57 C N sing 1.47 N N
68 N57 HN57 N H sing 1.01 N N
69 C59 C58 C C sing 1.53 N N
70 C58 H58 C H sing 1.09 N N
71 C58 H58A C H sing 1.09 N N
72 C59 H59 C H sing 1.09 N N
73 C59 H59A C H sing 1.09 N N