data_S53
#
_chem_comp.id S53
_chem_comp.name "[7-benzyl-2-(5-fluoro-2-methylphenoxy)-1-phenyl-1H-pyrrolo[2,3-c]pyridin-3-yl](piperazin-1-yl)methanone"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H29 F N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-20
_chem_comp.pdbx_modified_date 2011-08-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 520.597
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S53
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3SFC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S53 N1 N1 N 0 1 Y N N N N N -8.201 -25.444 -4.686 -2.835 1.356 2.448 N1 S53 1
S53 C2 C2 C 0 1 Y N N N N N -9.014 -24.492 -4.155 -2.490 0.438 1.567 C2 S53 2
S53 C3 C3 C 0 1 Y N N N N N -8.612 -23.874 -2.943 -1.200 0.407 1.056 C3 S53 3
S53 C4 C4 C 0 1 Y N N N N N -7.405 -24.263 -2.344 -0.280 1.374 1.502 C4 S53 4
S53 C5 C5 C 0 1 Y N N N N N -6.602 -25.255 -2.920 -0.699 2.321 2.435 C5 S53 5
S53 C6 C6 C 0 1 Y N N N N N -7.036 -25.834 -4.120 -1.991 2.276 2.884 C6 S53 6
S53 N9 N9 N 0 1 Y N N N N N -9.148 -22.911 -2.140 -0.550 -0.406 0.146 N9 S53 7
S53 C10 C10 C 0 1 Y N N N N N -8.350 -22.666 -1.111 0.741 -0.005 -0.011 C10 S53 8
S53 C11 C11 C 0 1 Y N N N N N -7.274 -23.519 -1.168 0.981 1.094 0.799 C11 S53 9
S53 C12 C12 C 0 1 Y N N N N N -10.308 -22.232 -2.296 -1.137 -1.490 -0.520 C12 S53 10
S53 C13 C13 C 0 1 Y N N N N N -10.372 -20.843 -2.553 -1.355 -2.685 0.153 C13 S53 11
S53 C14 C14 C 0 1 Y N N N N N -11.578 -20.155 -2.708 -1.934 -3.751 -0.506 C14 S53 12
S53 C15 C15 C 0 1 Y N N N N N -12.782 -20.847 -2.615 -2.296 -3.631 -1.835 C15 S53 13
S53 C16 C16 C 0 1 Y N N N N N -12.765 -22.219 -2.358 -2.079 -2.443 -2.509 C16 S53 14
S53 C17 C17 C 0 1 Y N N N N N -11.550 -22.890 -2.196 -1.506 -1.370 -1.854 C17 S53 15
S53 C23 C23 C 0 1 N N N N N N -10.258 -24.171 -4.965 -3.502 -0.582 1.112 C23 S53 16
S53 C24 C24 C 0 1 Y N N N N N -10.165 -22.749 -5.530 -4.496 0.074 0.188 C24 S53 17
S53 C27 C27 C 0 1 Y N N N N N -11.338 -22.007 -5.734 -4.298 0.035 -1.180 C27 S53 18
S53 C28 C28 C 0 1 Y N N N N N -11.269 -20.696 -6.241 -5.209 0.637 -2.027 C28 S53 19
S53 C29 C29 C 0 1 Y N N N N N -10.023 -20.106 -6.554 -6.318 1.277 -1.507 C29 S53 20
S53 C30 C30 C 0 1 Y N N N N N -8.853 -20.846 -6.354 -6.516 1.316 -0.140 C30 S53 21
S53 C31 C31 C 0 1 Y N N N N N -8.930 -22.151 -5.850 -5.608 0.709 0.708 C31 S53 22
S53 O37 O37 O 0 1 N N N N N N -8.647 -21.751 -0.134 1.646 -0.588 -0.827 O37 S53 23
S53 C38 C38 C 0 1 Y N N N N N -8.341 -21.920 1.177 2.420 -1.582 -0.316 C38 S53 24
S53 C39 C39 C 0 1 Y N N N N N -8.861 -23.016 1.855 2.206 -2.032 0.978 C39 S53 25
S53 C40 C40 C 0 1 Y N N N N N -8.539 -23.205 3.192 2.994 -3.044 1.496 C40 S53 26
S53 C41 C41 C 0 1 Y N N N N N -7.700 -22.305 3.845 3.996 -3.606 0.722 C41 S53 27
S53 C42 C42 C 0 1 Y N N N N N -7.183 -21.203 3.159 4.209 -3.158 -0.568 C42 S53 28
S53 C43 C43 C 0 1 Y N N N N N -7.505 -21.012 1.814 3.420 -2.151 -1.091 C43 S53 29
S53 C47 C47 C 0 1 N N N N N N -6.949 -19.825 1.061 3.650 -1.668 -2.500 C47 S53 30
S53 F51 F51 F 0 1 N N N N N N -9.043 -24.269 3.829 2.788 -3.483 2.757 F51 S53 31
S53 C52 C52 C 0 1 N N N N N N -6.058 -23.595 -0.307 2.239 1.831 0.928 C52 S53 32
S53 N53 N53 N 0 1 N N N N N N -5.662 -24.638 0.418 2.530 2.825 0.066 N53 S53 33
S53 O54 O54 O 0 1 N N N N N N -5.388 -22.570 -0.321 3.023 1.545 1.815 O54 S53 34
S53 C55 C55 C 0 1 N N N N N N -6.407 -25.898 0.471 3.809 3.546 0.149 C55 S53 35
S53 C56 C56 C 0 1 N N N N N N -6.675 -26.163 1.942 4.457 3.550 -1.240 C56 S53 36
S53 N57 N57 N 0 1 N N N N N N -5.449 -26.135 2.711 3.503 4.087 -2.220 N57 S53 37
S53 C58 C58 C 0 1 N N N N N N -4.640 -24.941 2.653 2.312 3.234 -2.328 C58 S53 38
S53 C59 C59 C 0 1 N N N N N N -4.409 -24.543 1.200 1.579 3.213 -0.987 C59 S53 39
S53 H5 H5 H 0 1 N N N N N N -5.678 -25.564 -2.454 -0.017 3.076 2.797 H5 S53 40
S53 H6 H6 H 0 1 N N N N N N -6.437 -26.596 -4.596 -2.327 3.004 3.607 H6 S53 41
S53 H13 H13 H 0 1 N N N N N N -9.448 -20.290 -2.633 -1.072 -2.780 1.191 H13 S53 42
S53 H14 H14 H 0 1 N N N N N N -11.576 -19.092 -2.899 -2.105 -4.681 0.017 H14 S53 43
S53 H15 H15 H 0 1 N N N N N N -13.720 -20.327 -2.740 -2.749 -4.466 -2.349 H15 S53 44
S53 H16 H16 H 0 1 N N N N N N -13.694 -22.764 -2.284 -2.363 -2.351 -3.547 H16 S53 45
S53 H17 H17 H 0 1 N N N N N N -11.563 -23.949 -1.987 -1.341 -0.441 -2.379 H17 S53 46
S53 H23 H23 H 0 1 N N N N N N -10.345 -24.887 -5.796 -2.993 -1.388 0.584 H23 S53 47
S53 H23A H23A H 0 0 N N N N N N -11.143 -24.247 -4.316 -4.024 -0.987 1.978 H23A S53 48
S53 H27 H27 H 0 1 N N N N N N -12.298 -22.444 -5.501 -3.431 -0.465 -1.586 H27 S53 49
S53 H28 H28 H 0 1 N N N N N N -12.179 -20.134 -6.393 -5.055 0.607 -3.096 H28 S53 50
S53 H29 H29 H 0 1 N N N N N N -9.975 -19.099 -6.942 -7.030 1.748 -2.169 H29 S53 51
S53 H30 H30 H 0 1 N N N N N N -7.892 -20.412 -6.588 -7.383 1.817 0.267 H30 S53 52
S53 H31 H31 H 0 1 N N N N N N -8.019 -22.713 -5.703 -5.762 0.739 1.776 H31 S53 53
S53 H39 H39 H 0 1 N N N N N N -9.509 -23.714 1.347 1.426 -1.592 1.582 H39 S53 54
S53 H41 H41 H 0 1 N N N N N N -7.449 -22.459 4.884 4.611 -4.396 1.127 H41 S53 55
S53 H42 H42 H 0 1 N N N N N N -6.537 -20.502 3.667 4.991 -3.598 -1.170 H42 S53 56
S53 H47 H47 H 0 1 N N N N N N -7.639 -18.974 1.156 4.373 -0.853 -2.491 H47 S53 57
S53 H47A H47A H 0 0 N N N N N N -5.969 -19.551 1.480 4.034 -2.488 -3.107 H47A S53 58
S53 H47B H47B H 0 0 N N N N N N -6.834 -20.086 -0.001 2.708 -1.315 -2.921 H47B S53 59
S53 H55 H55 H 0 1 N N N N N N -7.351 -25.814 -0.087 3.631 4.571 0.472 H55 S53 60
S53 H55A H55A H 0 0 N N N N N N -5.818 -26.716 0.030 4.467 3.044 0.858 H55A S53 61
S53 H56 H56 H 0 1 N N N N N N -7.354 -25.387 2.326 5.351 4.174 -1.223 H56 S53 62
S53 H56A H56A H 0 0 N N N N N N -7.139 -27.155 2.047 4.729 2.532 -1.518 H56A S53 63
S53 HN57 HN57 H 0 0 N N N N N N -5.707 -26.261 3.669 3.248 5.037 -1.993 HN57 S53 64
S53 H58 H58 H 0 1 N N N N N N -5.158 -24.124 3.177 1.651 3.628 -3.099 H58 S53 65
S53 H58A H58A H 0 0 N N N N N N -3.671 -25.133 3.137 2.614 2.220 -2.591 H58A S53 66
S53 H59 H59 H 0 1 N N N N N N -3.661 -25.218 0.759 0.764 2.491 -1.028 H59 S53 67
S53 H59A H59A H 0 0 N N N N N N -4.045 -23.505 1.167 1.183 4.206 -0.775 H59A S53 68
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S53 N1 C2 DOUB Y N 1
S53 N1 C6 SING Y N 2
S53 C23 C2 SING N N 3
S53 C2 C3 SING Y N 4
S53 C3 C4 DOUB Y N 5
S53 C3 N9 SING Y N 6
S53 C5 C4 SING Y N 7
S53 C4 C11 SING Y N 8
S53 C6 C5 DOUB Y N 9
S53 C5 H5 SING N N 10
S53 C6 H6 SING N N 11
S53 C12 N9 SING N N 12
S53 N9 C10 SING Y N 13
S53 C11 C10 DOUB Y N 14
S53 C10 O37 SING N N 15
S53 C11 C52 SING N N 16
S53 C13 C12 DOUB Y N 17
S53 C12 C17 SING Y N 18
S53 C14 C13 SING Y N 19
S53 C13 H13 SING N N 20
S53 C14 C15 DOUB Y N 21
S53 C14 H14 SING N N 22
S53 C15 C16 SING Y N 23
S53 C15 H15 SING N N 24
S53 C16 C17 DOUB Y N 25
S53 C16 H16 SING N N 26
S53 C17 H17 SING N N 27
S53 C24 C23 SING N N 28
S53 C23 H23 SING N N 29
S53 C23 H23A SING N N 30
S53 C31 C24 DOUB Y N 31
S53 C27 C24 SING Y N 32
S53 C28 C27 DOUB Y N 33
S53 C27 H27 SING N N 34
S53 C29 C28 SING Y N 35
S53 C28 H28 SING N N 36
S53 C29 C30 DOUB Y N 37
S53 C29 H29 SING N N 38
S53 C30 C31 SING Y N 39
S53 C30 H30 SING N N 40
S53 C31 H31 SING N N 41
S53 O37 C38 SING N N 42
S53 C38 C43 DOUB Y N 43
S53 C38 C39 SING Y N 44
S53 C39 C40 DOUB Y N 45
S53 C39 H39 SING N N 46
S53 C40 F51 SING N N 47
S53 C40 C41 SING Y N 48
S53 C42 C41 DOUB Y N 49
S53 C41 H41 SING N N 50
S53 C43 C42 SING Y N 51
S53 C42 H42 SING N N 52
S53 C47 C43 SING N N 53
S53 C47 H47 SING N N 54
S53 C47 H47A SING N N 55
S53 C47 H47B SING N N 56
S53 O54 C52 DOUB N N 57
S53 C52 N53 SING N N 58
S53 N53 C55 SING N N 59
S53 N53 C59 SING N N 60
S53 C55 C56 SING N N 61
S53 C55 H55 SING N N 62
S53 C55 H55A SING N N 63
S53 C56 N57 SING N N 64
S53 C56 H56 SING N N 65
S53 C56 H56A SING N N 66
S53 C58 N57 SING N N 67
S53 N57 HN57 SING N N 68
S53 C59 C58 SING N N 69
S53 C58 H58 SING N N 70
S53 C58 H58A SING N N 71
S53 C59 H59 SING N N 72
S53 C59 H59A SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S53 SMILES ACDLabs 12.01 O=C(c4c1ccnc(c1n(c2ccccc2)c4Oc3cc(F)ccc3C)Cc5ccccc5)N6CCNCC6
S53 InChI InChI 1.03 InChI=1S/C32H29FN4O2/c1-22-12-13-24(33)21-28(22)39-32-29(31(38)36-18-16-34-17-19-36)26-14-15-35-27(20-23-8-4-2-5-9-23)30(26)37(32)25-10-6-3-7-11-25/h2-15,21,34H,16-20H2,1H3
S53 InChIKey InChI 1.03 UIBPLELQTBSRIZ-UHFFFAOYSA-N
S53 SMILES_CANONICAL CACTVS 3.370 Cc1ccc(F)cc1Oc2n(c3ccccc3)c4c(Cc5ccccc5)nccc4c2C(=O)N6CCNCC6
S53 SMILES CACTVS 3.370 Cc1ccc(F)cc1Oc2n(c3ccccc3)c4c(Cc5ccccc5)nccc4c2C(=O)N6CCNCC6
S53 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 Cc1ccc(cc1Oc2c(c3ccnc(c3n2c4ccccc4)Cc5ccccc5)C(=O)N6CCNCC6)F
S53 SMILES "OpenEye OEToolkits" 1.7.2 Cc1ccc(cc1Oc2c(c3ccnc(c3n2c4ccccc4)Cc5ccccc5)C(=O)N6CCNCC6)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S53 "SYSTEMATIC NAME" ACDLabs 12.01 "[7-benzyl-2-(5-fluoro-2-methylphenoxy)-1-phenyl-1H-pyrrolo[2,3-c]pyridin-3-yl](piperazin-1-yl)methanone"
S53 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[2-(5-fluoranyl-2-methyl-phenoxy)-1-phenyl-7-(phenylmethyl)pyrrolo[2,3-c]pyridin-3-yl]-piperazin-1-yl-methanone"
#
_pdbx_chem_comp_audit.comp_id S53
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2011-06-20
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S53 N1 N 5.598 -1.087 1
S53 C2 C 6.897 -1.837 2
S53 C3 C 8.196 -1.087 3
S53 C4 C 8.196 0.413 4
S53 C5 C 6.897 1.163 5
S53 C6 C 5.598 0.413 6
S53 N9 N 9.616 -1.544 7
S53 C10 C 10.491 -0.337 8
S53 C11 C 9.616 0.870 9
S53 C12 C 10.082 -2.970 10
S53 C13 C 9.080 -4.087 11
S53 C14 C 9.546 -5.512 12
S53 C15 C 11.013 -5.822 13
S53 C16 C 12.015 -4.705 14
S53 C17 C 11.549 -3.280 15
S53 C23 C 6.897 -3.337 16
S53 C24 C 5.598 -4.087 17
S53 C27 C 5.598 -5.587 18
S53 C28 C 4.299 -6.337 19
S53 C29 C 3.000 -5.587 20
S53 C30 C 3.000 -4.087 21
S53 C31 C 4.299 -3.337 22
S53 O37 O 11.991 -0.337 23
S53 C38 C 13.290 0.413 24
S53 C39 C 13.290 1.913 25
S53 C40 C 14.589 2.663 26
S53 C41 C 15.888 1.913 27
S53 C42 C 15.888 0.413 28
S53 C43 C 14.589 -0.337 29
S53 C47 C 14.589 -1.837 30
S53 F51 F 14.589 4.163 31
S53 C52 C 10.082 2.296 32
S53 N53 N 9.080 3.412 33
S53 O54 O 11.198 3.297 34
S53 C55 C 9.546 4.838 35
S53 C56 C 8.544 5.954 36
S53 N57 N 7.076 5.645 37
S53 C58 C 6.610 4.219 38
S53 C59 C 7.612 3.103 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S53 N1 C2 DOUBLE NONE 1
S53 N1 C6 SINGLE NONE 2
S53 C23 C2 SINGLE NONE 3
S53 C2 C3 SINGLE NONE 4
S53 C3 C4 DOUBLE NONE 5
S53 C3 N9 SINGLE NONE 6
S53 C5 C4 SINGLE NONE 7
S53 C4 C11 SINGLE NONE 8
S53 C6 C5 DOUBLE NONE 9
S53 C12 N9 SINGLE NONE 10
S53 N9 C10 SINGLE NONE 11
S53 C11 C10 DOUBLE NONE 12
S53 C10 O37 SINGLE NONE 13
S53 C11 C52 SINGLE NONE 14
S53 C13 C12 DOUBLE NONE 15
S53 C12 C17 SINGLE NONE 16
S53 C14 C13 SINGLE NONE 17
S53 C14 C15 DOUBLE NONE 18
S53 C15 C16 SINGLE NONE 19
S53 C16 C17 DOUBLE NONE 20
S53 C24 C23 SINGLE NONE 21
S53 C31 C24 SINGLE NONE 22
S53 C27 C24 DOUBLE NONE 23
S53 C28 C27 SINGLE NONE 24
S53 C29 C28 DOUBLE NONE 25
S53 C29 C30 SINGLE NONE 26
S53 C30 C31 DOUBLE NONE 27
S53 O37 C38 SINGLE NONE 28
S53 C38 C43 SINGLE NONE 29
S53 C38 C39 DOUBLE NONE 30
S53 C39 C40 SINGLE NONE 31
S53 C40 F51 SINGLE NONE 32
S53 C40 C41 DOUBLE NONE 33
S53 C42 C41 SINGLE NONE 34
S53 C43 C42 DOUBLE NONE 35
S53 C47 C43 SINGLE NONE 36
S53 O54 C52 DOUBLE NONE 37
S53 C52 N53 SINGLE NONE 38
S53 N53 C55 SINGLE NONE 39
S53 N53 C59 SINGLE NONE 40
S53 C55 C56 SINGLE NONE 41
S53 C56 N57 SINGLE NONE 42
S53 C58 N57 SINGLE NONE 43
S53 C59 C58 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S53 MurckoScaffold S1 scaffold O=C(c1c(Oc2ccccc2)n(-c2ccccc2)c2c(Cc3ccccc3)nccc12)N1CCNCC1 InChI=1S/C31H28N4O2/c36-30(34-20-18-32-19-21-34)28-26-16-17-33-27(22-23-10-4-1-5-11-23)29(26)35(24-12-6-2-7-13-24)31(28)37-25-14-8-3-9-15-25/h1-17,32H,18-22H2 PNXRASYDVRNRSI-UHFFFAOYSA-N
S53 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
S53 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
S53 piperazine F3 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
S53 pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
S53 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S53 N1 S1 1
S53 C2 S1 1
S53 C3 S1 1
S53 C4 S1 1
S53 C5 S1 1
S53 C6 S1 1
S53 N9 S1 1
S53 C10 S1 1
S53 C11 S1 1
S53 C12 S1 1
S53 C13 S1 1
S53 C14 S1 1
S53 C15 S1 1
S53 C16 S1 1
S53 C17 S1 1
S53 C23 S1 1
S53 C24 S1 1
S53 C27 S1 1
S53 C28 S1 1
S53 C29 S1 1
S53 C30 S1 1
S53 C31 S1 1
S53 O37 S1 1
S53 C38 S1 1
S53 C39 S1 1
S53 C40 S1 1
S53 C41 S1 1
S53 C42 S1 1
S53 C43 S1 1
S53 C52 S1 1
S53 N53 S1 1
S53 O54 S1 1
S53 C55 S1 1
S53 C56 S1 1
S53 N57 S1 1
S53 C58 S1 1
S53 C59 S1 1
S53 N53 F1 1
S53 C52 F1 1
S53 O54 F1 1
S53 C11 F1 1
S53 C12 F2 1
S53 C13 F2 1
S53 C14 F2 1
S53 C15 F2 1
S53 C16 F2 1
S53 C17 F2 1
S53 C24 F2 2
S53 C31 F2 2
S53 C30 F2 2
S53 C29 F2 2
S53 C28 F2 2
S53 C27 F2 2
S53 C38 F2 3
S53 C43 F2 3
S53 C42 F2 3
S53 C41 F2 3
S53 C40 F2 3
S53 C39 F2 3
S53 N53 F3 1
S53 C55 F3 1
S53 C56 F3 1
S53 N57 F3 1
S53 C58 F3 1
S53 C59 F3 1
S53 C2 F4 1
S53 C3 F4 1
S53 C4 F4 1
S53 C5 F4 1
S53 C6 F4 1
S53 N1 F4 1
S53 C3 F5 1
S53 C4 F5 1
S53 C11 F5 1
S53 C10 F5 1
S53 N9 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id S53
_pdbe_chem_comp_rdkit_properties.exactmw 520.227
_pdbe_chem_comp_rdkit_properties.amw 520.608
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 68
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.188
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 267.024
_pdbe_chem_comp_rdkit_properties.tpsa 59.390
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.139
_pdbe_chem_comp_rdkit_properties.CrippenMR 145.151
_pdbe_chem_comp_rdkit_properties.chi0v 18.983
_pdbe_chem_comp_rdkit_properties.chi1v 10.537
_pdbe_chem_comp_rdkit_properties.chi2v 4.953
_pdbe_chem_comp_rdkit_properties.chi3v 4.953
_pdbe_chem_comp_rdkit_properties.chi4v 3.431
_pdbe_chem_comp_rdkit_properties.chi0n 47.983
_pdbe_chem_comp_rdkit_properties.chi1n 24.985
_pdbe_chem_comp_rdkit_properties.chi2n 4.953
_pdbe_chem_comp_rdkit_properties.chi3n 4.953
_pdbe_chem_comp_rdkit_properties.chi4n 3.431
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.490
_pdbe_chem_comp_rdkit_properties.kappa1 8.256
_pdbe_chem_comp_rdkit_properties.kappa2 10.708
_pdbe_chem_comp_rdkit_properties.kappa3 4.887
_pdbe_chem_comp_rdkit_properties.Phi 2.267
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S53 UniChem ZINC ZINC000072181035
S53 UniChem SureChEMBL SCHEMBL1149999
S53 UniChem 'PubChem TPHARMA' 131479163
S53 UniChem BindingDb 50353000
S53 UniChem PubChem 53346499
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S53 N1 2.093 -2.712 -0.149 ETKDGv3 1
S53 C2 2.078 -1.413 0.011 ETKDGv3 2
S53 C3 0.869 -0.673 -0.441 ETKDGv3 3
S53 C4 -0.105 -1.319 -1.060 ETKDGv3 4
S53 C5 -0.050 -2.774 -1.267 ETKDGv3 5
S53 C6 1.018 -3.432 -0.794 ETKDGv3 6
S53 N9 0.609 0.734 -0.421 ETKDGv3 7
S53 C10 -0.659 0.848 -1.086 ETKDGv3 8
S53 C11 -1.099 -0.340 -1.494 ETKDGv3 9
S53 C12 1.182 1.708 0.460 ETKDGv3 10
S53 C13 1.710 2.837 -0.039 ETKDGv3 11
S53 C14 2.255 3.866 0.871 ETKDGv3 12
S53 C15 2.227 3.673 2.195 ETKDGv3 13
S53 C16 1.658 2.427 2.749 ETKDGv3 14
S53 C17 1.165 1.493 1.927 ETKDGv3 15
S53 C23 3.252 -0.720 0.656 ETKDGv3 16
S53 C24 4.537 -1.486 0.468 ETKDGv3 17
S53 C27 5.242 -1.374 -0.673 ETKDGv3 18
S53 C28 6.481 -2.156 -0.863 ETKDGv3 19
S53 C29 6.901 -2.991 0.095 ETKDGv3 20
S53 C30 6.124 -3.133 1.344 ETKDGv3 21
S53 C31 5.003 -2.422 1.522 ETKDGv3 22
S53 O37 -1.372 2.041 -1.261 ETKDGv3 23
S53 C38 -1.501 3.012 -0.264 ETKDGv3 24
S53 C39 -1.195 4.284 -0.556 ETKDGv3 25
S53 C40 -1.215 5.317 0.498 ETKDGv3 26
S53 C41 -1.562 4.991 1.747 ETKDGv3 27
S53 C42 -1.969 3.608 2.066 ETKDGv3 28
S53 C43 -1.978 2.662 1.109 ETKDGv3 29
S53 C47 -2.484 1.281 1.420 ETKDGv3 30
S53 F51 -0.855 6.590 0.202 ETKDGv3 31
S53 C52 -2.395 -0.604 -2.147 ETKDGv3 32
S53 N53 -3.137 -1.805 -1.865 ETKDGv3 33
S53 O54 -2.864 0.248 -2.949 ETKDGv3 34
S53 C55 -4.054 -2.367 -2.860 ETKDGv3 35
S53 C56 -5.497 -2.160 -2.385 ETKDGv3 36
S53 N57 -5.691 -2.696 -1.028 ETKDGv3 37
S53 C58 -4.768 -2.071 -0.066 ETKDGv3 38
S53 C59 -3.307 -2.273 -0.487 ETKDGv3 39
S53 H5 -0.840 -3.302 -1.784 ETKDGv3 40
S53 H6 1.092 -4.504 -0.919 ETKDGv3 41
S53 H13 1.723 3.010 -1.107 ETKDGv3 42
S53 H14 2.670 4.779 0.463 ETKDGv3 43
S53 H15 2.621 4.428 2.863 ETKDGv3 44
S53 H16 1.640 2.272 3.820 ETKDGv3 45
S53 H17 0.748 0.581 2.336 ETKDGv3 46
S53 H23 3.046 -0.597 1.740 ETKDGv3 47
S53 H23A 3.384 0.291 0.219 ETKDGv3 48
S53 H27 4.908 -0.715 -1.466 ETKDGv3 49
S53 H28 7.046 -2.055 -1.780 ETKDGv3 50
S53 H29 7.807 -3.566 -0.043 ETKDGv3 51
S53 H30 6.463 -3.815 2.113 ETKDGv3 52
S53 H31 4.437 -2.536 2.437 ETKDGv3 53
S53 H39 -0.866 4.548 -1.553 ETKDGv3 54
S53 H41 -1.565 5.743 2.525 ETKDGv3 55
S53 H42 -2.291 3.379 3.075 ETKDGv3 56
S53 H47 -3.139 1.280 2.317 ETKDGv3 57
S53 H47A -3.082 0.896 0.569 ETKDGv3 58
S53 H47B -1.631 0.597 1.605 ETKDGv3 59
S53 H55 -3.852 -3.455 -2.968 ETKDGv3 60
S53 H55A -3.909 -1.898 -3.857 ETKDGv3 61
S53 H56 -6.190 -2.673 -3.085 ETKDGv3 62
S53 H56A -5.745 -1.076 -2.399 ETKDGv3 63
S53 HN57 -5.516 -3.729 -1.043 ETKDGv3 64
S53 H58 -4.925 -2.520 0.938 ETKDGv3 65
S53 H58A -4.988 -0.984 0.013 ETKDGv3 66
S53 H59 -3.051 -3.353 -0.430 ETKDGv3 67
S53 H59A -2.645 -1.726 0.218 ETKDGv3 68
#