Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : S52    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.38 N Y
2 C1 C6 C C sing 1.38 N Y
3 O1 C16 O C sing 1.35 N N
4 O1 C26 O C sing 1.36 N N
5 C2 C3 C C sing 1.38 N Y
6 C3 C4 C C doub 1.39 N Y
7 C4 C5 C C sing 1.39 N Y
8 C4 N12 C N sing 1.4 N Y
9 C5 C6 C C doub 1.38 N Y
10 N12 C13 N C sing 1.39 N Y
11 N12 C16 N C sing 1.36 N Y
12 C13 C14 C C doub 1.4 N Y
13 C13 C17 C C sing 1.39 N Y
14 C14 C15 C C sing 1.48 N Y
15 C14 C20 C C sing 1.39 N Y
16 C15 C16 C C doub 1.38 N Y
17 C15 C39 C C sing 1.46 N N
18 C17 C18 C C doub 1.38 N Y
19 C18 C19 C C sing 1.39 N Y
20 C19 C20 C C doub 1.38 N Y
21 C26 C29 C C doub 1.39 N Y
22 C26 C33 C C sing 1.39 N Y
23 C29 C30 C C sing 1.38 N Y
24 C30 C31 C C doub 1.38 N Y
25 C31 C32 C C sing 1.38 N Y
26 C32 C33 C C doub 1.38 N Y
27 C39 N40 C N sing 1.35 N N
28 C39 O41 C O doub 1.22 N N
29 N40 C42 N C sing 1.47 N N
30 N40 C46 N C sing 1.47 N N
31 C42 C43 C C sing 1.53 N N
32 C43 N44 C N sing 1.47 N N
33 N44 C45 N C sing 1.47 N N
34 C45 C46 C C sing 1.53 N N
35 C1 H1 C H sing 1.08 N N
36 C2 H2 C H sing 1.08 N N
37 C3 H3 C H sing 1.08 N N
38 C5 H5 C H sing 1.08 N N
39 C6 H6 C H sing 1.08 N N
40 C17 H17 C H sing 1.08 N N
41 C18 H18 C H sing 1.08 N N
42 C19 H19 C H sing 1.08 N N
43 C20 H20 C H sing 1.08 N N
44 C29 H29 C H sing 1.08 N N
45 C30 H30 C H sing 1.08 N N
46 C31 H31 C H sing 1.08 N N
47 C32 H32 C H sing 1.08 N N
48 C33 H33 C H sing 1.08 N N
49 C42 H42 C H sing 1.09 N N
50 C42 H42A C H sing 1.09 N N
51 C43 H43 C H sing 1.09 N N
52 C43 H43A C H sing 1.09 N N
53 N44 HN44 N H sing 1.01 N N
54 C45 H45 C H sing 1.09 N N
55 C45 H45A C H sing 1.09 N N
56 C46 H46 C H sing 1.09 N N
57 C46 H46A C H sing 1.09 N N