data_S52
#
_chem_comp.id S52
_chem_comp.name 2-phenoxy-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indole
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H23 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (2-Phenoxy-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-09-10
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 397.469
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code S52
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3OQK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S52 C1 C1 C 0 1 Y N N N N N -13.562 -20.862 -2.856 4.935 -0.202 -1.955 C1 S52 1
S52 O1 O1 O 0 1 N N N N N N -9.615 -21.918 0.133 0.254 1.245 -0.609 O1 S52 2
S52 C2 C2 C 0 1 Y N N N N N -13.719 -22.256 -2.900 3.789 -0.222 -2.729 C2 S52 3
S52 C3 C3 C 0 1 Y N N N N N -12.667 -23.082 -2.469 2.561 -0.458 -2.143 C3 S52 4
S52 C4 C4 C 0 1 Y N N N N N -11.424 -22.560 -2.004 2.478 -0.675 -0.774 C4 S52 5
S52 C5 C5 C 0 1 Y N N N N N -11.321 -21.137 -2.016 3.630 -0.654 0.001 C5 S52 6
S52 C6 C6 C 0 1 Y N N N N N -12.359 -20.299 -2.411 4.855 -0.417 -0.591 C6 S52 7
S52 N12 N12 N 0 1 Y N N N N N -10.343 -23.309 -1.635 1.234 -0.913 -0.176 N12 S52 8
S52 C13 C13 C 0 1 Y N N N N N -9.882 -24.372 -2.346 0.866 -2.099 0.438 C13 S52 9
S52 C14 C14 C 0 1 Y N N N N N -8.655 -24.756 -1.731 -0.446 -1.949 0.912 C14 S52 10
S52 C15 C15 C 0 1 Y N N N N N -8.426 -23.870 -0.678 -0.860 -0.581 0.545 C15 S52 11
S52 C16 C16 C 0 1 Y N N N N N -9.451 -22.957 -0.719 0.218 -0.010 -0.110 C16 S52 12
S52 C17 C17 C 0 1 Y N N N N N -10.390 -25.119 -3.418 1.530 -3.304 0.640 C17 S52 13
S52 C18 C18 C 0 1 Y N N N N N -9.665 -26.229 -3.868 0.898 -4.336 1.301 C18 S52 14
S52 C19 C19 C 0 1 Y N N N N N -8.458 -26.601 -3.247 -0.399 -4.186 1.769 C19 S52 15
S52 C20 C20 C 0 1 Y N N N N N -7.939 -25.864 -2.178 -1.073 -2.999 1.578 C20 S52 16
S52 C26 C26 C 0 1 Y N N N N N -9.358 -22.038 1.467 0.698 2.241 0.203 C26 S52 17
S52 C29 C29 C 0 1 Y N N N N N -8.524 -21.075 2.065 0.655 3.559 -0.228 C29 S52 18
S52 C30 C30 C 0 1 Y N N N N N -8.251 -21.199 3.435 1.107 4.570 0.598 C30 S52 19
S52 C31 C31 C 0 1 Y N N N N N -8.781 -22.261 4.192 1.603 4.268 1.854 C31 S52 20
S52 C32 C32 C 0 1 Y N N N N N -9.595 -23.200 3.566 1.647 2.955 2.285 C32 S52 21
S52 C33 C33 C 0 1 Y N N N N N -9.894 -23.101 2.204 1.191 1.942 1.465 C33 S52 22
S52 C39 C39 C 0 1 N N N N N N -7.189 -23.815 0.181 -2.151 0.048 0.823 C39 S52 23
S52 N40 N40 N 0 1 N N N N N N -6.702 -24.817 0.952 -3.188 -0.143 -0.016 N40 S52 24
S52 O41 O41 O 0 1 N N N N N N -6.603 -22.702 0.116 -2.289 0.745 1.812 O41 S52 25
S52 C42 C42 C 0 1 N N N N N N -7.286 -26.154 1.100 -4.523 0.388 0.301 C42 S52 26
S52 C43 C43 C 0 1 N N N N N N -7.597 -26.381 2.576 -5.032 1.180 -0.908 C43 S52 27
S52 N44 N44 N 0 1 N N N N N N -6.555 -25.906 3.456 -4.968 0.333 -2.107 N44 S52 28
S52 C45 C45 C 0 1 N N N N N N -5.919 -24.628 3.180 -3.583 -0.044 -2.420 C45 S52 29
S52 C46 C46 C 0 1 N N N N N N -5.477 -24.580 1.722 -3.014 -0.882 -1.276 C46 S52 30
S52 H1 H1 H 0 1 N N N N N N -14.373 -20.220 -3.167 5.894 -0.022 -2.417 H1 S52 31
S52 H2 H2 H 0 1 N N N N N N -14.640 -22.690 -3.262 3.855 -0.054 -3.794 H2 S52 32
S52 H3 H3 H 0 1 N N N N N N -12.805 -24.153 -2.491 1.667 -0.473 -2.748 H3 S52 33
S52 H5 H5 H 0 1 N N N N N N -10.390 -20.688 -1.703 3.568 -0.822 1.066 H5 S52 34
S52 H6 H6 H 0 1 N N N N N N -12.239 -19.226 -2.375 5.751 -0.401 0.011 H6 S52 35
S52 H17 H17 H 0 1 N N N N N N -11.323 -24.844 -3.888 2.540 -3.432 0.279 H17 S52 36
S52 H18 H18 H 0 1 N N N N N N -10.036 -26.807 -4.702 1.418 -5.271 1.455 H18 S52 37
S52 H19 H19 H 0 1 N N N N N N -7.924 -27.470 -3.602 -0.882 -5.003 2.285 H19 S52 38
S52 H20 H20 H 0 1 N N N N N N -7.007 -26.147 -1.711 -2.083 -2.884 1.943 H20 S52 39
S52 H29 H29 H 0 1 N N N N N N -8.107 -20.264 1.486 0.269 3.796 -1.209 H29 S52 40
S52 H30 H30 H 0 1 N N N N N N -7.622 -20.466 3.918 1.074 5.596 0.264 H30 S52 41
S52 H31 H31 H 0 1 N N N N N N -8.559 -22.346 5.245 1.956 5.060 2.498 H31 S52 42
S52 H32 H32 H 0 1 N N N N N N -10.002 -24.018 4.141 2.035 2.722 3.266 H32 S52 43
S52 H33 H33 H 0 1 N N N N N N -10.529 -23.833 1.727 1.221 0.917 1.804 H33 S52 44
S52 H42 H42 H 0 1 N N N N N N -8.210 -26.225 0.508 -5.205 -0.437 0.511 H42 S52 45
S52 H42A H42A H 0 0 N N N N N N -6.573 -26.914 0.747 -4.460 1.044 1.169 H42A S52 46
S52 H43 H43 H 0 1 N N N N N N -8.525 -25.843 2.819 -6.063 1.487 -0.734 H43 S52 47
S52 H43A H43A H 0 0 N N N N N N -7.720 -27.462 2.740 -4.408 2.062 -1.053 H43A S52 48
S52 HN44 HN44 H 0 0 N N N N N N -6.969 -25.824 4.363 -5.551 -0.484 -2.004 HN44 S52 49
S52 H45 H45 H 0 1 N N N N N N -6.634 -23.815 3.372 -3.564 -0.625 -3.342 H45 S52 50
S52 H45A H45A H 0 0 N N N N N N -5.041 -24.508 3.832 -2.980 0.855 -2.543 H45A S52 51
S52 H46 H46 H 0 1 N N N N N N -4.722 -25.352 1.512 -1.954 -1.064 -1.449 H46 S52 52
S52 H46A H46A H 0 0 N N N N N N -5.037 -23.603 1.474 -3.548 -1.831 -1.220 H46A S52 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S52 C1 C2 DOUB Y N 1
S52 C1 C6 SING Y N 2
S52 O1 C16 SING N N 3
S52 O1 C26 SING N N 4
S52 C2 C3 SING Y N 5
S52 C3 C4 DOUB Y N 6
S52 C4 C5 SING Y N 7
S52 C4 N12 SING Y N 8
S52 C5 C6 DOUB Y N 9
S52 N12 C13 SING Y N 10
S52 N12 C16 SING Y N 11
S52 C13 C14 DOUB Y N 12
S52 C13 C17 SING Y N 13
S52 C14 C15 SING Y N 14
S52 C14 C20 SING Y N 15
S52 C15 C16 DOUB Y N 16
S52 C15 C39 SING N N 17
S52 C17 C18 DOUB Y N 18
S52 C18 C19 SING Y N 19
S52 C19 C20 DOUB Y N 20
S52 C26 C29 DOUB Y N 21
S52 C26 C33 SING Y N 22
S52 C29 C30 SING Y N 23
S52 C30 C31 DOUB Y N 24
S52 C31 C32 SING Y N 25
S52 C32 C33 DOUB Y N 26
S52 C39 N40 SING N N 27
S52 C39 O41 DOUB N N 28
S52 N40 C42 SING N N 29
S52 N40 C46 SING N N 30
S52 C42 C43 SING N N 31
S52 C43 N44 SING N N 32
S52 N44 C45 SING N N 33
S52 C45 C46 SING N N 34
S52 C1 H1 SING N N 35
S52 C2 H2 SING N N 36
S52 C3 H3 SING N N 37
S52 C5 H5 SING N N 38
S52 C6 H6 SING N N 39
S52 C17 H17 SING N N 40
S52 C18 H18 SING N N 41
S52 C19 H19 SING N N 42
S52 C20 H20 SING N N 43
S52 C29 H29 SING N N 44
S52 C30 H30 SING N N 45
S52 C31 H31 SING N N 46
S52 C32 H32 SING N N 47
S52 C33 H33 SING N N 48
S52 C42 H42 SING N N 49
S52 C42 H42A SING N N 50
S52 C43 H43 SING N N 51
S52 C43 H43A SING N N 52
S52 N44 HN44 SING N N 53
S52 C45 H45 SING N N 54
S52 C45 H45A SING N N 55
S52 C46 H46 SING N N 56
S52 C46 H46A SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S52 SMILES ACDLabs 12.01 O=C(c4c1ccccc1n(c2ccccc2)c4Oc3ccccc3)N5CCNCC5
S52 SMILES_CANONICAL CACTVS 3.370 O=C(N1CCNCC1)c2c(Oc3ccccc3)n(c4ccccc4)c5ccccc25
S52 SMILES CACTVS 3.370 O=C(N1CCNCC1)c2c(Oc3ccccc3)n(c4ccccc4)c5ccccc25
S52 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)n2c3ccccc3c(c2Oc4ccccc4)C(=O)N5CCNCC5
S52 SMILES "OpenEye OEToolkits" 1.7.0 c1ccc(cc1)n2c3ccccc3c(c2Oc4ccccc4)C(=O)N5CCNCC5
S52 InChI InChI 1.03 InChI=1S/C25H23N3O2/c29-24(27-17-15-26-16-18-27)23-21-13-7-8-14-22(21)28(19-9-3-1-4-10-19)25(23)30-20-11-5-2-6-12-20/h1-14,26H,15-18H2
S52 InChIKey InChI 1.03 PAQQZWUEZAUGRI-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S52 "SYSTEMATIC NAME" ACDLabs 12.01 (2-phenoxy-1-phenyl-1H-indol-3-yl)(piperazin-1-yl)methanone
S52 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (2-phenoxy-1-phenyl-indol-3-yl)-piperazin-1-yl-methanone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S52 'Create component' 2010-09-10 RCSB
S52 'Modify aromatic_flag' 2011-06-04 RCSB
S52 'Modify descriptor' 2011-06-04 RCSB
S52 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id S52
_pdbx_chem_comp_synonyms.name (2-Phenoxy-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id S52
_pdbe_chem_comp_synonyms.name (2-Phenoxy-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
S52 C1 C 6.868 -5.191 1
S52 O1 O 9.393 0.514 2
S52 C2 C 5.595 -4.398 3
S52 C3 C 5.644 -2.899 4
S52 C4 C 6.968 -2.193 5
S52 C5 C 8.241 -2.985 6
S52 C6 C 8.191 -4.484 7
S52 N12 N 7.018 -0.694 8
S52 C13 C 5.598 -0.236 9
S52 C14 C 5.598 1.264 10
S52 C15 C 7.018 1.721 11
S52 C16 C 7.893 0.514 12
S52 C17 C 4.299 -0.986 13
S52 C18 C 3.000 -0.236 14
S52 C19 C 3.000 1.264 15
S52 C20 C 4.299 2.014 16
S52 C26 C 10.542 -0.451 17
S52 C29 C 10.282 -1.928 18
S52 C30 C 11.431 -2.892 19
S52 C31 C 12.840 -2.379 20
S52 C32 C 13.101 -0.902 21
S52 C33 C 11.951 0.062 22
S52 C39 C 7.483 3.147 23
S52 N40 N 8.951 3.456 24
S52 O41 O 6.482 4.263 25
S52 C42 C 9.417 4.882 26
S52 C43 C 10.885 5.191 27
S52 N44 N 11.887 4.074 28
S52 C45 C 11.421 2.649 29
S52 C46 C 9.953 2.339 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
S52 C1 C2 DOUBLE NONE 1
S52 C1 C6 SINGLE NONE 2
S52 O1 C16 SINGLE NONE 3
S52 O1 C26 SINGLE NONE 4
S52 C2 C3 SINGLE NONE 5
S52 C3 C4 DOUBLE NONE 6
S52 C4 C5 SINGLE NONE 7
S52 C4 N12 SINGLE NONE 8
S52 C5 C6 DOUBLE NONE 9
S52 N12 C13 SINGLE NONE 10
S52 N12 C16 SINGLE NONE 11
S52 C13 C14 SINGLE NONE 12
S52 C13 C17 DOUBLE NONE 13
S52 C14 C15 SINGLE NONE 14
S52 C14 C20 DOUBLE NONE 15
S52 C15 C16 DOUBLE NONE 16
S52 C15 C39 SINGLE NONE 17
S52 C17 C18 SINGLE NONE 18
S52 C18 C19 DOUBLE NONE 19
S52 C19 C20 SINGLE NONE 20
S52 C26 C29 DOUBLE NONE 21
S52 C26 C33 SINGLE NONE 22
S52 C29 C30 SINGLE NONE 23
S52 C30 C31 DOUBLE NONE 24
S52 C31 C32 SINGLE NONE 25
S52 C32 C33 DOUBLE NONE 26
S52 C39 N40 SINGLE NONE 27
S52 C39 O41 DOUBLE NONE 28
S52 N40 C42 SINGLE NONE 29
S52 N40 C46 SINGLE NONE 30
S52 C42 C43 SINGLE NONE 31
S52 C43 N44 SINGLE NONE 32
S52 N44 C45 SINGLE NONE 33
S52 C45 C46 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
S52 MurckoScaffold S1 scaffold O=C(c1c(Oc2ccccc2)n(-c2ccccc2)c2ccccc12)N1CCNCC1 InChI=1S/C25H23N3O2/c29-24(27-17-15-26-16-18-27)23-21-13-7-8-14-22(21)28(19-9-3-1-4-10-19)25(23)30-20-11-5-2-6-12-20/h1-14,26H,15-18H2 PAQQZWUEZAUGRI-UHFFFAOYSA-N
S52 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
S52 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
S52 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
S52 piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
S52 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
S52 C1 S1 1
S52 O1 S1 1
S52 C2 S1 1
S52 C3 S1 1
S52 C4 S1 1
S52 C5 S1 1
S52 C6 S1 1
S52 N12 S1 1
S52 C13 S1 1
S52 C14 S1 1
S52 C15 S1 1
S52 C16 S1 1
S52 C17 S1 1
S52 C18 S1 1
S52 C19 S1 1
S52 C20 S1 1
S52 C26 S1 1
S52 C29 S1 1
S52 C30 S1 1
S52 C31 S1 1
S52 C32 S1 1
S52 C33 S1 1
S52 C39 S1 1
S52 N40 S1 1
S52 O41 S1 1
S52 C42 S1 1
S52 C43 S1 1
S52 N44 S1 1
S52 C45 S1 1
S52 C46 S1 1
S52 N40 F1 1
S52 C39 F1 1
S52 O41 F1 1
S52 C15 F1 1
S52 C13 F2 1
S52 C14 F2 1
S52 C15 F2 1
S52 C16 F2 1
S52 N12 F2 1
S52 C20 F2 1
S52 C19 F2 1
S52 C18 F2 1
S52 C17 F2 1
S52 C1 F3 1
S52 C2 F3 1
S52 C3 F3 1
S52 C4 F3 1
S52 C5 F3 1
S52 C6 F3 1
S52 C13 F3 2
S52 C14 F3 2
S52 C20 F3 2
S52 C19 F3 2
S52 C18 F3 2
S52 C17 F3 2
S52 C26 F3 3
S52 C29 F3 3
S52 C30 F3 3
S52 C31 F3 3
S52 C32 F3 3
S52 C33 F3 3
S52 N40 F4 1
S52 C42 F4 1
S52 C43 F4 1
S52 N44 F4 1
S52 C45 F4 1
S52 C46 F4 1
S52 C13 F5 1
S52 C14 F5 1
S52 C15 F5 1
S52 C16 F5 1
S52 N12 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id S52
_pdbe_chem_comp_rdkit_properties.exactmw 397.179
_pdbe_chem_comp_rdkit_properties.amw 397.478
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 53
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.160
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 207.422
_pdbe_chem_comp_rdkit_properties.tpsa 46.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.870
_pdbe_chem_comp_rdkit_properties.CrippenMR 114.211
_pdbe_chem_comp_rdkit_properties.chi0v 14.658
_pdbe_chem_comp_rdkit_properties.chi1v 8.151
_pdbe_chem_comp_rdkit_properties.chi2v 3.797
_pdbe_chem_comp_rdkit_properties.chi3v 3.797
_pdbe_chem_comp_rdkit_properties.chi4v 2.644
_pdbe_chem_comp_rdkit_properties.chi0n 37.658
_pdbe_chem_comp_rdkit_properties.chi1n 19.598
_pdbe_chem_comp_rdkit_properties.chi2n 3.797
_pdbe_chem_comp_rdkit_properties.chi3n 3.797
_pdbe_chem_comp_rdkit_properties.chi4n 2.644
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.570
_pdbe_chem_comp_rdkit_properties.kappa1 5.987
_pdbe_chem_comp_rdkit_properties.kappa2 8.047
_pdbe_chem_comp_rdkit_properties.kappa3 3.333
_pdbe_chem_comp_rdkit_properties.Phi 1.606
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
S52 UniChem ZINC ZINC000058655517
S52 UniChem SureChEMBL SCHEMBL1144754
S52 UniChem 'PubChem TPHARMA' 85158517
S52 UniChem BindingDb 50329034
S52 UniChem PubChem 44158435
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
S52 C1 -5.541 0.631 -0.197 ETKDGv3 1
S52 O1 -0.763 -1.675 0.096 ETKDGv3 2
S52 C2 -4.888 -0.259 -0.952 ETKDGv3 3
S52 C3 -3.413 -0.219 -1.035 ETKDGv3 4
S52 C4 -2.722 0.711 -0.352 ETKDGv3 5
S52 C5 -3.452 1.696 0.480 ETKDGv3 6
S52 C6 -4.788 1.657 0.555 ETKDGv3 7
S52 N12 -1.287 0.737 -0.392 ETKDGv3 8
S52 C13 -0.495 1.785 -0.944 ETKDGv3 9
S52 C14 0.826 1.284 -1.243 ETKDGv3 10
S52 C15 0.818 -0.123 -0.850 ETKDGv3 11
S52 C16 -0.403 -0.404 -0.373 ETKDGv3 12
S52 C17 -0.876 3.019 -1.297 ETKDGv3 13
S52 C18 0.127 3.886 -1.972 ETKDGv3 14
S52 C19 1.358 3.412 -2.259 ETKDGv3 15
S52 C20 1.729 2.017 -1.901 ETKDGv3 16
S52 C26 -1.691 -1.915 1.118 ETKDGv3 17
S52 C29 -1.867 -1.054 2.140 ETKDGv3 18
S52 C30 -2.869 -1.339 3.188 ETKDGv3 19
S52 C31 -3.591 -2.465 3.137 ETKDGv3 20
S52 C32 -3.381 -3.427 2.035 ETKDGv3 21
S52 C33 -2.477 -3.168 1.083 ETKDGv3 22
S52 C39 1.939 -1.076 -0.956 ETKDGv3 23
S52 N40 3.287 -0.687 -0.635 ETKDGv3 24
S52 O41 1.703 -2.257 -1.330 ETKDGv3 25
S52 C42 3.558 0.297 0.423 ETKDGv3 26
S52 C43 4.748 -0.136 1.307 ETKDGv3 27
S52 N44 5.701 -1.040 0.634 ETKDGv3 28
S52 C45 5.741 -0.833 -0.815 ETKDGv3 29
S52 C46 4.398 -1.250 -1.412 ETKDGv3 30
S52 H1 -6.621 0.602 -0.133 ETKDGv3 31
S52 H2 -5.437 -1.012 -1.502 ETKDGv3 32
S52 H3 -2.899 -0.948 -1.649 ETKDGv3 33
S52 H5 -2.903 2.440 1.043 ETKDGv3 34
S52 H6 -5.320 2.372 1.168 ETKDGv3 35
S52 H17 -1.880 3.376 -1.121 ETKDGv3 36
S52 H18 -0.141 4.898 -2.247 ETKDGv3 37
S52 H19 2.077 4.043 -2.765 ETKDGv3 38
S52 H20 2.686 1.607 -2.194 ETKDGv3 39
S52 H29 -1.281 -0.147 2.209 ETKDGv3 40
S52 H30 -3.018 -0.634 3.996 ETKDGv3 41
S52 H31 -4.326 -2.675 3.903 ETKDGv3 42
S52 H32 -3.960 -4.340 2.002 ETKDGv3 43
S52 H33 -2.326 -3.874 0.275 ETKDGv3 44
S52 H42 3.800 1.273 -0.049 ETKDGv3 45
S52 H42A 2.665 0.446 1.068 ETKDGv3 46
S52 H43 4.353 -0.663 2.202 ETKDGv3 47
S52 H43A 5.276 0.775 1.671 ETKDGv3 48
S52 HN44 6.658 -0.857 1.016 ETKDGv3 49
S52 H45 5.958 0.234 -1.053 ETKDGv3 50
S52 H45A 6.547 -1.456 -1.260 ETKDGv3 51
S52 H46 4.335 -2.360 -1.395 ETKDGv3 52
S52 H46A 4.331 -0.906 -2.466 ETKDGv3 53
#