Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RZ1    

Bonds between two atoms of the molecule

Total Number of Bonds: 36


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C4 S C S sing 1.76 N N
2 N3S S N S sing 1.66 N N
3 O1S S O S doub 1.42 N N
4 S O2S S O doub 1.42 N N
5 C1' N' C N sing 1.47 N N
6 N' C7 N C sing 1.35 N N
7 N' HN' N H sing 0.97 N N
8 O' C7 O C doub 1.22 N N
9 C7 C1 C C sing 1.48 N N
10 C1 C5 C C doub 1.4 N Y
11 C1 C3 C C sing 1.4 N Y
12 C3 C2 C C doub 1.38 N Y
13 C2 C4 C C sing 1.38 N Y
14 C2 H2 C H sing 1.08 N N
15 C3 H3 C H sing 1.08 N N
16 C6 C4 C C doub 1.38 N Y
17 C5 C6 C C sing 1.38 N Y
18 C5 H5 C H sing 1.08 N N
19 C6 H6 C H sing 1.08 N N
20 C2' F2'1 C F sing 1.4 N N
21 F3'1 C3' F C sing 1.4 N N
22 C4' F4'1 C F sing 1.4 N N
23 C5' F5'1 C F sing 1.4 N N
24 C2' F2'2 C F sing 1.4 N N
25 F3'2 C3' F C sing 1.4 N N
26 C4' F4'2 C F sing 1.4 N N
27 C5' F5'2 C F sing 1.4 N N
28 F5'3 C5' F C sing 1.4 N N
29 C1' C2' C C sing 1.53 N N
30 C1' H1' C H sing 1.09 N N
31 C1' H1'A C H sing 1.09 N N
32 C3' C2' C C sing 1.53 N N
33 C3' C4' C C sing 1.53 N N
34 N3S HN3S N H sing 0.97 N N
35 N3S HN3A N H sing 0.97 N N
36 C5' C4' C C sing 1.53 N N