Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RZ1

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 36


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 S S S N N N 0 -7.013 -0.646 -0.083
2 N' N N' N N N 0 -0.338 0.568 -0.012
3 O' O O' N N N 0 -1.167 2.628 0.038
4 C1 C C1 N Y N 0 -2.761 0.919 -0.023
5 C2 C C2 N Y N 0 -4.298 -0.925 -0.075
6 C3 C C3 N Y N 0 -3.001 -0.455 -0.057
7 C4 C C4 N Y N 0 -5.359 -0.037 -0.059
8 C5 C C5 N Y N 0 -3.836 1.81 -0.007
9 C6 C C6 N Y N 0 -5.128 1.326 -0.026
10 C7 C C7 N N N 0 -1.374 1.43 0.003
11 F3'2 F F3'2 N N N 0 3.65 1.173 1.181
12 F2'1 F F2'1 N N N 0 1.795 -0.914 1.107
13 F3'1 F F3'1 N N N 0 3.669 1.237 -1.103
14 F4'1 F F4'1 N N N 0 4.208 -1.563 1.109
15 F5'1 F F5'1 N N N 0 6.082 0.588 -1.101
16 F2'2 F F2'2 N N N 0 1.814 -0.851 -1.177
17 F4'2 F F4'2 N N N 0 4.227 -1.5 -1.174
18 F5'2 F F5'2 N N N 0 6.756 -1.299 -0.005
19 F5'3 F F5'3 N N N 0 6.062 0.525 1.183
20 C1' C C1' N N N 0 1.037 1.074 0.013
21 O1S O O1S N N N 0 -7.818 0.401 -0.606
22 N3S N N3S N N N 0 -7.481 -0.854 1.492
23 C2' C C2' N N N 0 2.014 -0.103 -0.011
24 O2S O O2S N N N 0 -6.954 -1.944 -0.658
25 C3' C C3' N N N 0 3.45 0.425 0.015
26 C4' C C4' N N N 0 4.427 -0.752 -0.009
27 C5' C C5' N N N 0 5.862 -0.223 0.018
28 HN' H HN' N N N 0 -0.502 -0.388 -0.04
29 H2 H H2 N N N 0 -4.486 -1.988 -0.102
30 H3 H H3 N N N 0 -2.174 -1.149 -0.07
31 H5 H H5 N N N 0 -3.657 2.874 0.02
32 H6 H H6 N N N 0 -5.961 2.014 -0.014
33 H1' H H1' N N N 0 1.207 1.706 -0.858
34 H1'A H H1'A N N N 0 1.193 1.657 0.921
35 HN3S H HN3S N N N 0 -7.742 -1.732 1.809
36 HN3A H HN3A N N N 0 -7.494 -0.096 2.098