Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RY5    

Bonds between two atoms of the molecule

Total Number of Bonds: 37


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 N3 O N sing 1.21 N Y
2 O2 C13 O C sing 1.34 N Y
3 N3 C11 N C doub 1.3 N Y
4 C13 C12 C C doub 1.35 N Y
5 C11 C10 C C sing 1.51 N N
6 C11 C12 C C sing 1.41 N Y
7 C10 N2 C N sing 1.47 N N
8 O3 C14 O C doub 1.21 N N
9 N2 C14 N C sing 1.35 N N
10 N2 C9 N C sing 1.34 N N
11 C14 C8 C C sing 1.51 N N
12 O1 C9 O C doub 1.22 N N
13 C9 N1 C N sing 1.35 N N
14 C3 C2 C C doub 1.38 N Y
15 C3 C4 C C sing 1.38 N Y
16 C2 C1 C C sing 1.38 N Y
17 C8 N1 C N sing 1.46 N N
18 C8 C4 C C sing 1.51 N N
19 C8 C7 C C sing 1.54 N N
20 C4 C5 C C doub 1.39 N Y
21 C1 CL1 C CL sing 1.74 N N
22 C1 C15 C C doub 1.38 N Y
23 C5 C15 C C sing 1.38 N Y
24 C5 C6 C C sing 1.51 N N
25 C7 C6 C C sing 1.54 N N
26 C10 H1 C H sing 1.09 N N
27 C10 H2 C H sing 1.09 N N
28 C12 H3 C H sing 1.08 N N
29 C13 H4 C H sing 1.08 N N
30 C15 H5 C H sing 1.08 N N
31 C2 H6 C H sing 1.08 N N
32 C3 H7 C H sing 1.08 N N
33 C6 H8 C H sing 1.09 N N
34 C6 H9 C H sing 1.09 N N
35 C7 H10 C H sing 1.09 N N
36 C7 H11 C H sing 1.09 N N
37 N1 H12 N H sing 0.97 N N