Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : RY5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 34


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 -3.638 -0.962 -0.2
2 C10 C C2 N N N 0 3.295 0.707 0.605
3 C11 C C3 N Y N 0 3.485 -0.773 0.395
4 C12 C C4 N Y N 0 4.135 -1.398 -0.694
5 C13 C C5 N Y N 0 4.041 -2.72 -0.416
6 C14 C C6 N N N 0 0.85 1.115 0.835
7 C15 C C7 N Y N 0 -3.59 0.231 0.495
8 C2 C C8 N Y N 0 -2.53 -1.392 -0.909
9 C3 C C9 N Y N 0 -1.383 -0.623 -0.926
10 C4 C C10 N Y N 0 -1.334 0.577 -0.237
11 C5 C C11 N Y N 0 -2.441 1.002 0.48
12 C6 C C12 N N N 0 -2.139 2.327 1.149
13 C7 C C13 N N N 0 -0.893 2.876 0.419
14 C8 C C14 S N N 0 -0.231 1.592 -0.1
15 C9 C C15 N N N 0 1.75 1.511 -1.161
16 N1 N N1 N N N 0 0.455 1.822 -1.371
17 N2 N N2 N N N 0 1.98 1.107 0.096
18 N3 N N3 N Y N 0 3.089 -1.73 1.184
19 O1 O O1 N N N 0 2.612 1.588 -2.015
20 O2 O O2 N Y N 0 3.383 -2.818 0.748
21 O3 O O3 N N N 0 0.731 0.805 2.001
22 CL1 CL CL1 N N N 0 -5.083 -1.924 -0.178
23 H1 H H1 N N N 0 3.357 0.935 1.669
24 H2 H H2 N N N 0 4.073 1.253 0.071
25 H6 H H6 N N N 0 -2.562 -2.327 -1.448
26 H3 H H3 N N N 0 4.599 -0.929 -1.549
27 H4 H H4 N N N 0 4.421 -3.535 -1.015
28 H5 H H5 N N N 0 -4.453 0.564 1.052
29 H7 H H7 N N N 0 -0.519 -0.96 -1.48
30 H8 H H8 N N N 0 -2.98 3.011 1.029
31 H9 H H9 N N N 0 -1.924 2.176 2.207
32 H10 H H10 N N N 0 -1.182 3.528 -0.406
33 H11 H H11 N N N 0 -0.235 3.4 1.113
34 H12 H H12 N N N 0 0.059 2.135 -2.199