Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RPO    

Bonds between two atoms of the molecule

Total Number of Bonds: 104


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O sing 1.43 N N
2 C1 C2 C C sing 1.53 N N
3 C1 O5 C O sing 1.43 N N
4 O1 CBT O C sing 1.43 N N
5 C2 N2 C N sing 1.47 N N
6 C2 C3 C C sing 1.53 N N
7 C3 O3 C O sing 1.43 N N
8 C3 C4 C C sing 1.53 N N
9 C4 O4 C O sing 1.43 N N
10 C4 C5 C C sing 1.53 N N
11 O4 CAU O C sing 1.43 N N
12 C5 O5 C O sing 1.43 N N
13 C5 C6 C C sing 1.53 N N
14 C6 O6 C O sing 1.43 N N
15 C1' O1' C O sing 1.43 N N
16 C1' C2' C C sing 1.54 N N
17 C1' O4' C O sing 1.44 N N
18 O1' CBW O C sing 1.43 N N
19 C2' O2' C O sing 1.43 N N
20 C2' C3' C C sing 1.55 N N
21 C3' O3' C O sing 1.43 N N
22 C3' C4' C C sing 1.55 N N
23 O3' CBQ O C sing 1.43 N N
24 C4' O4' C O sing 1.44 N N
25 C4' C5' C C sing 1.53 N N
26 C5' O5' C O sing 1.43 N N
27 NAA CAQ N C sing 1.47 N N
28 NAB CBD N C sing 1.47 N N
29 NAC CBE N C sing 1.47 N N
30 NAD CBF N C sing 1.47 N N
31 OAG CBH O C sing 1.43 N N
32 OAH CBI O C sing 1.43 N N
33 OAI CBJ O C sing 1.43 N N
34 CAL CAM C C doub 1.38 N Y
35 CAL CAN C C sing 1.38 N Y
36 CAM CAO C C sing 1.38 N Y
37 CAN CAP C C doub 1.38 N Y
38 CAO CAU C C sing 1.51 N N
39 CAO CBC C C doub 1.38 N Y
40 CAP CBC C C sing 1.38 N Y
41 CAQ CBM C C sing 1.53 N N
42 CAT CBD C C sing 1.53 N N
43 CAT CBE C C sing 1.53 N N
44 OAV CBM O C sing 1.43 N N
45 OAV CBQ O C sing 1.43 N N
46 CBD CBI C C sing 1.53 N N
47 CBE CBT C C sing 1.53 N N
48 CBF CBH C C sing 1.53 N N
49 CBF CBQ C C sing 1.53 N N
50 CBH CBJ C C sing 1.53 N N
51 CBI CBW C C sing 1.53 N N
52 CBJ CBM C C sing 1.53 N N
53 CBT CBW C C sing 1.53 N N
54 C1 H1 C H sing 1.09 N N
55 C2 H2 C H sing 1.09 N N
56 N2 HN2 N H sing 1.01 N N
57 N2 HN2A N H sing 1.01 N N
58 C3 H3 C H sing 1.09 N N
59 O3 HO3 O H sing 0.97 N N
60 C4 H4 C H sing 1.09 N N
61 C5 H5 C H sing 1.09 N N
62 C6 H6 C H sing 1.09 N N
63 C6 H6A C H sing 1.09 N N
64 O6 HO6 O H sing 0.97 N N
65 C1' H1' C H sing 1.09 N N
66 C2' H2' C H sing 1.09 N N
67 O2' HO2' O H sing 0.97 N N
68 C3' H3' C H sing 1.09 N N
69 C4' H4' C H sing 1.09 N N
70 C5' H5' C H sing 1.09 N N
71 C5' H5'A C H sing 1.09 N N
72 O5' HO5' O H sing 0.97 N N
73 NAA HNAA N H sing 1.01 N N
74 NAA HNAB N H sing 1.01 N N
75 NAB HNAC N H sing 1.01 N N
76 NAB HNAD N H sing 1.01 N N
77 NAC HNAE N H sing 1.01 N N
78 NAC HNAF N H sing 1.01 N N
79 NAD HNAG N H sing 1.01 N N
80 NAD HNAH N H sing 1.01 N N
81 OAG HOAG O H sing 0.97 N N
82 OAH HOAH O H sing 0.97 N N
83 OAI HOAI O H sing 0.97 N N
84 CAL HAL C H sing 1.08 N N
85 CAM HAM C H sing 1.08 N N
86 CAN HAN C H sing 1.08 N N
87 CAP HAP C H sing 1.08 N N
88 CAQ HAQ C H sing 1.09 N N
89 CAQ HAQA C H sing 1.09 N N
90 CAT HAT C H sing 1.09 N N
91 CAT HATA C H sing 1.09 N N
92 CAU HAU C H sing 1.09 N N
93 CAU HAUA C H sing 1.09 N N
94 CBC HBC C H sing 1.08 N N
95 CBD HBD C H sing 1.09 N N
96 CBE HBE C H sing 1.09 N N
97 CBF HBF C H sing 1.09 N N
98 CBH HBH C H sing 1.09 N N
99 CBI HBI C H sing 1.09 N N
100 CBJ HBJ C H sing 1.09 N N
101 CBM HBM C H sing 1.09 N N
102 CBQ HBQ C H sing 1.09 N N
103 CBT HBT C H sing 1.09 N N
104 CBW HBW C H sing 1.09 N N