Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : RPO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 100


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 2.26 -0.995 1.765
2 C1' C C1' S N N 0 -1.8 -1.805 -0.486
3 C2 C C2 R N N 0 1.942 0.499 1.87
4 C2' C C2' R N N 0 -2.917 -1.16 0.364
5 C3 C C3 R N N 0 2.816 1.27 0.877
6 C3' C C3' S N N 0 -3.377 0.051 -0.478
7 C4 C C4 S N N 0 4.289 0.969 1.169
8 C4' C C4' R N N 0 -2.483 -0.006 -1.737
9 C5 C C5 R N N 0 4.517 -0.543 1.091
10 C5' C C5' N N N 0 -2.102 1.407 -2.184
11 C6 C C6 N N N 0 5.973 -0.858 1.441
12 CAL C CAL N Y N 0 7.567 4.834 -1.637
13 CAM C CAM N Y N 0 6.855 4.208 -0.631
14 CAN C CAN N Y N 0 8.506 4.126 -2.363
15 CAO C CAO N Y N 0 7.083 2.873 -0.351
16 CAP C CAP N Y N 0 8.733 2.791 -2.083
17 CAQ C CAQ N N N 0 -6.152 4.154 0.781
18 CAT C CAT N N N 0 2.325 -5.095 -0.415
19 CAU C CAU N N N 0 6.307 2.191 0.746
20 CBC C CBC N Y N 0 8.022 2.165 -1.077
21 CBD C CBD R N N 0 0.994 -5.261 -1.151
22 CBE C CBE S N N 0 2.692 -3.61 -0.353
23 CBF C CBF R N N 0 -7.091 0.112 -0.248
24 CBH C CBH R N N 0 -8.057 0.81 0.714
25 CBI C CBI S N N 0 -0.101 -4.496 -0.403
26 CBJ C CBJ S N N 0 -7.847 2.324 0.622
27 CBM C CBM S N N 0 -6.383 2.649 0.93
28 CBQ C CBQ R N N 0 -5.656 0.522 0.094
29 CBT C CBT R N N 0 1.597 -2.846 0.394
30 CBW C CBW R N N 0 0.266 -3.012 -0.341
31 H1 H H1 N N N 0 1.672 -1.545 2.5
32 H2 H H2 N N N 0 2.147 0.845 2.884
33 H3 H H3 N N N 0 2.573 0.961 -0.139
34 H4 H H4 N N N 0 4.543 1.325 2.167
35 H4' H H4' N N N 0 -2.993 -0.533 -2.543
36 H1' H H1' N N N 0 -2.206 -2.611 -1.097
37 H2' H H2' N N N 0 -2.524 -0.831 1.326
38 H3' H H3' N N N 0 -3.213 0.98 0.068
39 H5 H H5 N N N 0 4.302 -0.892 0.081
40 H5' H H5' N N N 0 -3.007 1.981 -2.384
41 H5'A H H5'A N N N 0 -1.529 1.895 -1.396
42 H6 H H6 N N N 0 6.12 -1.938 1.448
43 H6A H H6A N N N 0 6.631 -0.408 0.697
44 HAL H HAL N N N 0 7.386 5.876 -1.859
45 HAM H HAM N N N 0 6.121 4.761 -0.064
46 HAN H HAN N N N 0 9.062 4.615 -3.149
47 HAP H HAP N N N 0 9.467 2.238 -2.651
48 HAQ H HAQ N N N 0 -6.384 4.458 -0.24
49 HAQA H HAQA N N N 0 -6.797 4.692 1.476
50 HAT H HAT N N N 0 2.233 -5.489 0.597
51 HATA H HATA N N N 0 3.105 -5.639 -0.948
52 HAU H HAU N N N 0 6.049 2.918 1.515
53 HAUA H HAUA N N N 0 6.916 1.4 1.184
54 HBC H HBC N N N 0 8.2 1.123 -0.859
55 HBD H HBD N N N 0 1.086 -4.866 -2.163
56 HBE H HBE N N N 0 2.784 -3.216 -1.365
57 HBF H HBF N N N 0 -7.195 -0.969 -0.149
58 HBH H HBH N N N 0 -9.084 0.566 0.441
59 HBI H HBI N N N 0 -0.193 -4.891 0.609
60 HBJ H HBJ N N N 0 -8.492 2.826 1.344
61 HBM H HBM N N N 0 -6.151 2.345 1.951
62 HBQ H HBQ N N N 0 -5.414 0.19 1.103
63 HBT H HBT N N N 0 1.505 -3.24 1.406
64 HBW H HBW N N N 0 0.358 -2.618 -1.353
65 HN2 H HN2 N N N 0 -0.072 0.218 2.192
66 HN2A H HN2A N N N 0 0.305 1.706 1.553
67 HNAA H HNAA N N N 0 -4.127 3.93 0.488
68 HNAB H HNAB N N N 0 -4.568 5.454 0.984
69 HNAC H HNAC N N N 0 1.35 -7.213 -1.7
70 HNAD H HNAD N N N 0 0.488 -7.059 -0.286
71 HNAE H HNAE N N N 0 4.68 -4.048 -0.044
72 HNAF H HNAF N N N 0 4.266 -2.487 0.351
73 HNAG H HNAG N N N 0 -6.776 0.063 -2.282
74 HNAH H HNAH N N N 0 -8.363 0.313 -1.854
75 HO2' H HO2' N N N 0 -3.749 -2.885 1.023
76 HO3 H HO3 N N N 0 1.662 2.934 0.856
77 HO5' H HO5' N N N 0 -1.034 2.195 -3.714
78 HO6 H HO6 N N N 0 7.188 -0.49 3.019
79 HOAG H HOAG N N N 0 -8.376 0.775 2.714
80 HOAH H HOAH N N N 0 -1.639 -5.569 -1.168
81 HOAI H HOAI N N N 0 -9.081 2.593 -0.962
82 N2 N N2 N N N 0 0.525 0.722 1.553
83 NAA N NAA N N N 0 -4.747 4.465 1.076
84 NAB N NAB N N N 0 0.642 -6.686 -1.211
85 NAC N NAC N N N 0 3.97 -3.451 0.353
86 NAD N NAD N N N 0 -7.4 0.511 -1.628
87 O1 O O1 N N N 0 1.939 -1.46 0.453
88 O1' O O1' N N N 0 -0.756 -2.298 0.357
89 O2' O O2' N N N 0 -3.996 -2.077 0.552
90 O3 O O3 N N N 0 2.578 2.672 1.02
91 O3' O O3' N N N 0 -4.754 -0.081 -0.836
92 O4 O O4 N N N 0 5.112 1.626 0.203
93 O4' O O4' N N N 0 -1.308 -0.736 -1.322
94 O5 O O5 N N N 0 3.652 -1.203 2.018
95 O5' O O5' N N N 0 -1.312 1.334 -3.372
96 O6 O O6 N N N 0 6.279 -0.327 2.731
97 OAG O OAG N N N 0 -7.799 0.373 2.05
98 OAH O OAH N N N 0 -1.344 -4.651 -1.09
99 OAI O OAI N N N 0 -8.168 2.771 -0.698
100 OAV O OAV N N N 0 -5.538 1.944 0.018