Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RAP    

Bonds between two atoms of the molecule

Total Number of Bonds: 147


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O sing 1.35 N N
2 C1 O2 C O doub 1.2 N N
3 C1 C2 C C sing 1.49 N N
4 O1 C34 O C sing 1.45 N N
5 C2 C3 C C sing 1.53 N N
6 C2 N7 C N sing 1.47 N N
7 C2 H2 C H sing 1.11 N N
8 C3 C4 C C sing 1.53 N N
9 C3 H31A C H sing 1.09 N N
10 C3 H32 C H sing 1.09 N N
11 C4 C5 C C sing 1.53 N N
12 C4 H41 C H sing 1.09 N N
13 C4 H42 C H sing 1.09 N N
14 C5 C6 C C sing 1.54 N N
15 C5 H51 C H sing 1.09 N N
16 C5 H52 C H sing 1.09 N N
17 C6 N7 C N sing 1.49 N N
18 C6 H61 C H sing 1.09 N N
19 C6 H62 C H sing 1.09 N N
20 N7 C8 N C sing 1.33 N N
21 C8 O3 C O doub 1.21 N N
22 C8 C9 C C sing 1.47 N N
23 C9 O4 C O doub 1.21 N N
24 C9 C10 C C sing 1.5 N N
25 C10 O5 C O sing 1.42 N N
26 C10 O6 C O sing 1.43 N N
27 C10 C11 C C sing 1.53 N N
28 O5 C14 O C sing 1.42 N N
29 O6 HO6 O H sing 0.97 N N
30 C11 C12 C C sing 1.53 N N
31 C11 C43 C C sing 1.53 N N
32 C11 H11 C H sing 1.09 N N
33 C12 C13 C C sing 1.54 N N
34 C12 H121 C H sing 1.09 N N
35 C12 H122 C H sing 1.09 N N
36 C13 C14 C C sing 1.54 N N
37 C13 H131 C H sing 1.09 N N
38 C13 H132 C H sing 1.09 N N
39 C14 C15 C C sing 1.51 N N
40 C14 H14 C H sing 1.11 N N
41 C15 C16 C C sing 1.53 N N
42 C15 H151 C H sing 1.09 N N
43 C15 H152 C H sing 1.09 N N
44 C16 O7 C O sing 1.43 N N
45 C16 C17 C C sing 1.51 N N
46 C16 H16 C H sing 1.09 N N
47 O7 C50 O C sing 1.43 N N
48 C17 C18 C C doub 1.32 E N
49 C17 C44 C C sing 1.51 N N
50 C18 C19 C C sing 1.46 N N
51 C18 H18 C H sing 1.08 N N
52 C19 C20 C C doub 1.35 E N
53 C19 H19 C H sing 1.08 N N
54 C20 C21 C C sing 1.46 N N
55 C20 H20 C H sing 1.07 N N
56 C21 C22 C C doub 1.33 E N
57 C21 H21 C H sing 1.08 N N
58 C22 C23 C C sing 1.51 N N
59 C22 H22 C H sing 1.08 N N
60 C23 C24 C C sing 1.53 N N
61 C23 C45 C C sing 1.53 N N
62 C23 H23 C H sing 1.09 N N
63 C24 C25 C C sing 1.53 N N
64 C24 H241 C H sing 1.09 N N
65 C24 H242 C H sing 1.09 N N
66 C25 C26 C C sing 1.51 N N
67 C25 C46 C C sing 1.53 N N
68 C25 H25 C H sing 1.09 N N
69 C26 O8 C O doub 1.21 N N
70 C26 C27 C C sing 1.51 N N
71 C27 O9 C O sing 1.43 N N
72 C27 C28 C C sing 1.53 N N
73 C27 H27 C H sing 1.09 N N
74 O9 C51 O C sing 1.43 N N
75 C28 O10 C O sing 1.43 N N
76 C28 C29 C C sing 1.51 N N
77 C28 H28 C H sing 1.09 N N
78 O10 HO1 O H sing 0.97 N N
79 C29 C30 C C doub 1.31 E N
80 C29 C47 C C sing 1.5 N N
81 C30 C31 C C sing 1.51 N N
82 C30 H30 C H sing 1.09 N N
83 C31 C32 C C sing 1.51 N N
84 C31 C48 C C sing 1.53 N N
85 C31 H31 C H sing 1.09 N N
86 C32 O11 C O doub 1.21 N N
87 C32 C33 C C sing 1.5 N N
88 C33 C34 C C sing 1.53 N N
89 C33 H331 C H sing 1.09 N N
90 C33 H332 C H sing 1.09 N N
91 C34 C35 C C sing 1.53 N N
92 C34 H34 C H sing 1.09 N N
93 C35 C36 C C sing 1.53 N N
94 C35 C49 C C sing 1.53 N N
95 C35 H35 C H sing 1.09 N N
96 C36 C37 C C sing 1.53 N N
97 C36 H361 C H sing 1.09 N N
98 C36 H362 C H sing 1.09 N N
99 C37 C38 C C sing 1.53 N N
100 C37 C42 C C sing 1.53 N N
101 C37 H37 C H sing 1.09 N N
102 C38 C39 C C sing 1.53 N N
103 C38 H381 C H sing 1.09 N N
104 C38 H382 C H sing 1.09 N N
105 C39 O12 C O sing 1.43 N N
106 C39 C40 C C sing 1.53 N N
107 C39 H39 C H sing 1.09 N N
108 O12 C52 O C sing 1.43 N N
109 C40 O13 C O sing 1.43 N N
110 C40 C41 C C sing 1.53 N N
111 C40 H40 C H sing 1.09 N N
112 O13 HO3 O H sing 0.97 N N
113 C41 C42 C C sing 1.53 N N
114 C41 H411 C H sing 1.09 N N
115 C41 H412 C H sing 1.09 N N
116 C42 H421 C H sing 1.09 N N
117 C42 H422 C H sing 1.09 N N
118 C43 H431 C H sing 1.09 N N
119 C43 H432 C H sing 1.09 N N
120 C43 H433 C H sing 1.09 N N
121 C44 H441 C H sing 1.09 N N
122 C44 H442 C H sing 1.09 N N
123 C44 H443 C H sing 1.09 N N
124 C45 H451 C H sing 1.09 N N
125 C45 H452 C H sing 1.09 N N
126 C45 H453 C H sing 1.09 N N
127 C46 H461 C H sing 1.09 N N
128 C46 H462 C H sing 1.09 N N
129 C46 H463 C H sing 1.09 N N
130 C47 H471 C H sing 1.09 N N
131 C47 H472 C H sing 1.09 N N
132 C47 H473 C H sing 1.09 N N
133 C48 H481 C H sing 1.09 N N
134 C48 H482 C H sing 1.09 N N
135 C48 H483 C H sing 1.09 N N
136 C49 H491 C H sing 1.09 N N
137 C49 H492 C H sing 1.09 N N
138 C49 H493 C H sing 1.09 N N
139 C50 H501 C H sing 1.09 N N
140 C50 H502 C H sing 1.09 N N
141 C50 H503 C H sing 1.09 N N
142 C51 H511 C H sing 1.09 N N
143 C51 H512 C H sing 1.09 N N
144 C51 H513 C H sing 1.09 N N
145 C52 H521 C H sing 1.09 N N
146 C52 H522 C H sing 1.09 N N
147 C52 H523 C H sing 1.09 N N