data_RAP
#
_chem_comp.id RAP
_chem_comp.name "RAPAMYCIN IMMUNOSUPPRESSANT DRUG"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C51 H79 N O13"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 914.172
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code RAP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FKL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RAP C1 C1 C 0 1 N N N N N N -18.170 -8.490 -12.929 -0.484 -1.683 2.683 C1 RAP 1
RAP O1 O1 O 0 1 N N N N N N -18.628 -9.534 -13.762 -1.810 -1.848 2.486 O1 RAP 2
RAP O2 O2 O 0 1 N N N N N N -17.418 -8.687 -12.023 0.157 -1.068 1.870 O2 RAP 3
RAP C2 C2 C 0 1 N N S N N N -18.734 -7.090 -13.237 0.141 -2.297 3.893 C2 RAP 4
RAP C3 C3 C 0 1 N N N N N N -19.188 -6.431 -11.908 -0.601 -1.875 5.163 C3 RAP 5
RAP C4 C4 C 0 1 N N N N N N -20.585 -6.965 -11.442 -0.032 -2.646 6.357 C4 RAP 6
RAP C5 C5 C 0 1 N N N N N N -21.615 -6.767 -12.591 1.465 -2.365 6.502 C5 RAP 7
RAP C6 C6 C 0 1 N N N N N N -21.169 -7.565 -13.819 2.185 -2.801 5.216 C6 RAP 8
RAP N7 N7 N 0 1 N N N N N N -19.834 -7.074 -14.268 1.568 -2.021 4.111 N7 RAP 9
RAP C8 C8 C 0 1 N N N N N N -19.534 -6.623 -15.526 2.337 -1.171 3.428 C8 RAP 10
RAP O3 O3 O 0 1 N N N N N N -18.370 -6.282 -15.811 1.855 -0.119 3.062 O3 RAP 11
RAP C9 C9 C 0 1 N N N N N N -20.517 -6.423 -16.544 3.770 -1.381 3.187 C9 RAP 12
RAP O4 O4 O 0 1 N N N N N N -21.160 -5.371 -16.642 4.152 -2.528 3.168 O4 RAP 13
RAP C10 C10 C 0 1 N N R N N N -20.861 -7.591 -17.528 4.791 -0.311 2.930 C10 RAP 14
RAP O5 O5 O 0 1 N N N N N N -21.671 -8.493 -16.753 4.823 0.047 1.552 O5 RAP 15
RAP O6 O6 O 0 1 N N N N N N -21.713 -7.099 -18.561 4.468 0.840 3.719 O6 RAP 16
RAP C11 C11 C 0 1 N N R N N N -19.572 -8.290 -18.154 6.159 -0.840 3.375 C11 RAP 17
RAP C12 C12 C 0 1 N N N N N N -19.990 -9.636 -18.824 7.257 0.189 3.093 C12 RAP 18
RAP C13 C13 C 0 1 N N N N N N -20.833 -10.480 -17.824 7.185 0.558 1.602 C13 RAP 19
RAP C14 C14 C 0 1 N N S N N N -22.098 -9.738 -17.321 5.764 1.089 1.360 C14 RAP 20
RAP C15 C15 C 0 1 N N N N N N -22.878 -10.426 -16.163 5.666 1.814 0.038 C15 RAP 21
RAP C16 C16 C 0 1 N N S N N N -23.637 -11.701 -16.613 6.196 1.037 -1.164 C16 RAP 22
RAP O7 O7 O 0 1 N N N N N N -24.705 -11.299 -17.514 7.587 1.302 -1.344 O7 RAP 23
RAP C17 C17 C 0 1 N N N N N N -24.203 -12.374 -15.343 5.434 1.514 -2.380 C17 RAP 24
RAP C18 C18 C 0 1 N N N N N N -23.631 -13.544 -14.933 4.730 0.700 -3.151 C18 RAP 25
RAP C19 C19 C 0 1 N N N N N N -24.160 -14.546 -13.975 3.989 1.243 -4.289 C19 RAP 26
RAP C20 C20 C 0 1 N N N N N N -23.559 -15.723 -13.729 3.248 0.437 -5.077 C20 RAP 27
RAP C21 C21 C 0 1 N N N N N N -23.734 -16.467 -12.472 2.483 1.061 -6.158 C21 RAP 28
RAP C22 C22 C 0 1 N N N N N N -23.214 -17.701 -12.279 1.705 0.310 -6.932 C22 RAP 29
RAP C23 C23 C 0 1 N N S N N N -23.388 -18.491 -10.970 0.909 0.948 -8.040 C23 RAP 30
RAP C24 C24 C 0 1 N N N N N N -21.973 -18.518 -10.293 -0.470 0.289 -8.104 C24 RAP 31
RAP C25 C25 C 0 1 N N R N N N -21.265 -17.131 -10.007 -1.315 0.722 -6.904 C25 RAP 32
RAP C26 C26 C 0 1 N N N N N N -19.753 -17.403 -9.880 -2.366 -0.318 -6.611 C26 RAP 33
RAP O8 O8 O 0 1 N N N N N N -19.314 -17.834 -8.829 -2.480 -1.280 -7.331 O8 RAP 34
RAP C27 C27 C 0 1 N N R N N N -18.852 -17.364 -11.140 -3.269 -0.159 -5.415 C27 RAP 35
RAP O9 O9 O 0 1 N N N N N N -17.671 -18.181 -10.878 -2.468 -0.004 -4.241 O9 RAP 36
RAP C28 C28 C 0 1 N N R N N N -18.361 -15.893 -11.441 -4.172 -1.381 -5.260 C28 RAP 37
RAP O10 O10 O 0 1 N N N N N N -18.026 -15.245 -10.225 -5.276 -1.278 -6.160 O10 RAP 38
RAP C29 C29 C 0 1 N N N N N N -19.447 -15.125 -12.201 -4.691 -1.442 -3.839 C29 RAP 39
RAP C30 C30 C 0 1 N N N N N N -20.135 -14.100 -11.581 -4.242 -2.383 -3.053 C30 RAP 40
RAP C31 C31 C 0 1 N N R N N N -21.156 -13.104 -12.208 -4.671 -2.517 -1.614 C31 RAP 41
RAP C32 C32 C 0 1 N N N N N N -20.429 -11.751 -12.511 -3.652 -1.794 -0.765 C32 RAP 42
RAP O11 O11 O 0 1 N N N N N N -20.653 -10.737 -11.874 -3.104 -0.807 -1.204 O11 RAP 43
RAP C33 C33 C 0 1 N N N N N N -19.502 -11.738 -13.733 -3.308 -2.290 0.610 C33 RAP 44
RAP C34 C34 C 0 1 N N S N N N -18.236 -10.914 -13.507 -2.501 -1.232 1.372 C34 RAP 45
RAP C35 C35 C 0 1 N N R N N N -17.046 -11.243 -14.499 -3.453 -0.158 1.905 C35 RAP 46
RAP C36 C36 C 0 1 N N N N N N -16.246 -12.549 -14.196 -2.652 0.903 2.660 C36 RAP 47
RAP C37 C37 C 0 1 N N S N N N -15.636 -12.704 -12.765 -3.612 1.898 3.315 C37 RAP 48
RAP C38 C38 C 0 1 N N N N N N -14.948 -14.101 -12.618 -4.426 1.183 4.396 C38 RAP 49
RAP C39 C39 C 0 1 N N R N N N -14.457 -14.325 -11.167 -5.387 2.178 5.052 C39 RAP 50
RAP O12 O12 O 0 1 N N N N N N -13.863 -15.665 -11.068 -6.147 1.511 6.061 O12 RAP 51
RAP C40 C40 C 0 1 N N R N N N -13.432 -13.209 -10.749 -4.588 3.318 5.685 C40 RAP 52
RAP O13 O13 O 0 1 N N N N N N -13.036 -13.381 -9.378 -5.485 4.246 6.297 O13 RAP 53
RAP C41 C41 C 0 1 N N N N N N -14.018 -11.766 -10.916 -3.774 4.032 4.604 C41 RAP 54
RAP C42 C42 C 0 1 N N N N N N -14.696 -11.513 -12.284 -2.813 3.038 3.949 C42 RAP 55
RAP C43 C43 C 0 1 N N N N N N -18.762 -7.370 -19.103 6.130 -1.115 4.884 C43 RAP 56
RAP C44 C44 C 0 1 N N N N N N -25.339 -11.674 -14.576 5.478 2.993 -2.703 C44 RAP 57
RAP C45 C45 C 0 1 N N N N N N -23.891 -19.937 -11.276 1.630 0.741 -9.374 C45 RAP 58
RAP C46 C46 C 0 1 N N N N N N -21.812 -16.263 -8.834 -2.001 2.053 -7.220 C46 RAP 59
RAP C47 C47 C 0 1 N N N N N N -19.710 -15.626 -13.644 -5.693 -0.421 -3.372 C47 RAP 60
RAP C48 C48 C 0 1 N N N N N N -22.322 -12.947 -11.164 -4.701 -4.003 -1.236 C48 RAP 61
RAP C49 C49 C 0 1 N N N N N N -17.393 -11.128 -15.984 -4.191 0.496 0.735 C49 RAP 62
RAP C50 C50 C 0 1 N N N N N N -25.241 -12.389 -18.339 8.148 0.150 -1.976 C50 RAP 63
RAP C51 C51 C 0 1 N N N N N N -17.420 -19.334 -11.708 -2.214 1.394 -4.097 C51 RAP 64
RAP C52 C52 C 0 1 N N N N N N -14.410 -16.520 -10.013 -7.411 2.173 6.132 C52 RAP 65
RAP H2 H2 H 0 1 N N N N N N -17.912 -6.497 -13.703 0.033 -3.398 3.804 H2 RAP 66
RAP H31A 1H3 H 0 0 N N N N N N -18.419 -6.554 -11.110 -1.659 -2.105 5.052 H31A RAP 67
RAP H32 2H3 H 0 1 N N N N N N -19.183 -5.318 -11.983 -0.470 -0.807 5.321 H32 RAP 68
RAP H41 1H4 H 0 1 N N N N N N -20.539 -8.022 -11.091 -0.188 -3.714 6.203 H41 RAP 69
RAP H42 2H4 H 0 1 N N N N N N -20.920 -6.497 -10.486 -0.550 -2.335 7.266 H42 RAP 70
RAP H51 1H5 H 0 1 N N N N N N -22.653 -7.024 -12.275 1.862 -2.924 7.350 H51 RAP 71
RAP H52 2H5 H 0 1 N N N N N N -21.782 -5.690 -12.826 1.624 -1.297 6.664 H52 RAP 72
RAP H61 1H6 H 0 1 N N N N N N -21.174 -8.664 -13.633 2.031 -3.862 5.043 H61 RAP 73
RAP H62 2H6 H 0 1 N N N N N N -21.925 -7.539 -14.637 3.244 -2.572 5.287 H62 RAP 74
RAP HO6 HO6 H 0 1 N N N N N N -21.921 -7.807 -19.158 3.603 1.151 3.417 HO6 RAP 75
RAP H11 H11 H 0 1 N N N N N N -18.862 -8.507 -17.322 6.385 -1.765 2.846 H11 RAP 76
RAP H121 1H12 H 0 0 N N N N N N -20.521 -9.476 -19.791 8.233 -0.241 3.320 H121 RAP 77
RAP H122 2H12 H 0 0 N N N N N N -19.111 -10.201 -19.214 7.094 1.078 3.702 H122 RAP 78
RAP H131 1H13 H 0 0 N N N N N N -21.100 -11.468 -18.264 7.361 -0.324 0.989 H131 RAP 79
RAP H132 2H13 H 0 0 N N N N N N -20.207 -10.824 -16.968 7.916 1.330 1.369 H132 RAP 80
RAP H14 H14 H 0 1 N N N N N N -22.766 -9.681 -18.211 5.587 1.852 2.148 H14 RAP 81
RAP H151 1H15 H 0 0 N N N N N N -22.201 -10.648 -15.305 6.225 2.747 0.124 H151 RAP 82
RAP H152 2H15 H 0 0 N N N N N N -23.570 -9.705 -15.667 4.615 2.057 -0.135 H152 RAP 83
RAP H16 H16 H 0 1 N N N N N N -22.973 -12.420 -17.147 6.032 -0.030 -1.024 H16 RAP 84
RAP H18 H18 H 0 1 N N N N N N -22.652 -13.693 -15.420 4.688 -0.366 -2.967 H18 RAP 85
RAP H19 H19 H 0 1 N N N N N N -25.085 -14.402 -13.392 4.006 2.295 -4.542 H19 RAP 86
RAP H20 H20 H 0 1 N N N N N N -22.923 -16.077 -14.557 3.231 -0.625 -4.917 H20 RAP 87
RAP H21 H21 H 0 1 N N N N N N -24.296 -16.070 -11.610 2.555 2.128 -6.315 H21 RAP 88
RAP H22 H22 H 0 1 N N N N N N -22.662 -18.054 -13.166 1.655 -0.755 -6.761 H22 RAP 89
RAP H23 H23 H 0 1 N N N N N N -24.144 -18.021 -10.298 0.802 2.015 -7.847 H23 RAP 90
RAP H241 1H24 H 0 0 N N N N N N -22.030 -19.102 -9.345 -0.357 -0.795 -8.094 H241 RAP 91
RAP H242 2H24 H 0 0 N N N N N N -21.290 -19.161 -10.895 -0.975 0.591 -9.023 H242 RAP 92
RAP H25 H25 H 0 1 N N N N N N -21.507 -16.474 -10.874 -0.676 0.845 -6.030 H25 RAP 93
RAP H27 H27 H 0 1 N N N N N N -19.436 -17.740 -12.011 -3.886 0.728 -5.547 H27 RAP 94
RAP H28 H28 H 0 1 N N N N N N -17.449 -15.924 -12.082 -3.604 -2.286 -5.473 H28 RAP 95
RAP HO1 HO1 H 0 1 N N N N N N -17.730 -14.360 -10.406 -5.821 -2.066 -6.025 HO1 RAP 96
RAP H30 H30 H 0 1 N N N N N N -19.850 -14.075 -10.515 -3.530 -3.098 -3.454 H30 RAP 97
RAP H31 H31 H 0 1 N N N N N N -21.575 -13.464 -13.176 -5.658 -2.093 -1.448 H31 RAP 98
RAP H331 1H33 H 0 0 N N N N N N -19.250 -12.775 -14.054 -2.707 -3.198 0.533 H331 RAP 99
RAP H332 2H33 H 0 0 N N N N N N -20.045 -11.392 -14.643 -4.220 -2.506 1.165 H332 RAP 100
RAP H34 H34 H 0 1 N N N N N N -17.860 -11.130 -12.479 -1.779 -0.777 0.698 H34 RAP 101
RAP H35 H35 H 0 1 N N N N N N -16.343 -10.407 -14.271 -4.176 -0.615 2.580 H35 RAP 102
RAP H361 1H36 H 0 0 N N N N N N -16.884 -13.434 -14.422 -2.001 1.432 1.963 H361 RAP 103
RAP H362 2H36 H 0 0 N N N N N N -15.439 -12.672 -14.956 -2.046 0.423 3.429 H362 RAP 104
RAP H37 H37 H 0 1 N N N N N N -16.500 -12.642 -12.063 -4.287 2.302 2.561 H37 RAP 105
RAP H381 1H38 H 0 0 N N N N N N -15.615 -14.926 -12.959 -3.752 0.779 5.151 H381 RAP 106
RAP H382 2H38 H 0 0 N N N N N N -14.123 -14.233 -13.356 -4.996 0.371 3.945 H382 RAP 107
RAP H39 H39 H 0 1 N N N N N N -15.318 -14.258 -10.462 -6.062 2.582 4.297 H39 RAP 108
RAP H40 H40 H 0 1 N N N N N N -12.554 -13.316 -11.428 -3.913 2.913 6.440 H40 RAP 109
RAP HO3 HO3 H 0 1 N N N N N N -12.416 -12.706 -9.125 -4.942 4.947 6.683 HO3 RAP 110
RAP H411 1H41 H 0 0 N N N N N N -14.720 -11.530 -10.082 -3.204 4.844 5.055 H411 RAP 111
RAP H412 2H41 H 0 0 N N N N N N -13.231 -11.000 -10.722 -4.448 4.437 3.849 H412 RAP 112
RAP H421 1H42 H 0 0 N N N N N N -13.933 -11.275 -13.062 -2.138 2.633 4.704 H421 RAP 113
RAP H422 2H42 H 0 0 N N N N N N -15.257 -10.549 -12.271 -2.233 3.547 3.179 H422 RAP 114
RAP H431 1H43 H 0 0 N N N N N N -17.860 -7.858 -19.540 7.098 -1.504 5.201 H431 RAP 115
RAP H432 2H43 H 0 0 N N N N N N -19.416 -6.960 -19.907 5.919 -0.188 5.418 H432 RAP 116
RAP H433 3H43 H 0 0 N N N N N N -18.483 -6.421 -18.587 5.354 -1.847 5.106 H433 RAP 117
RAP H441 1H44 H 0 0 N N N N N N -25.747 -12.159 -13.659 5.973 3.141 -3.662 H441 RAP 118
RAP H442 2H44 H 0 0 N N N N N N -25.016 -10.637 -14.321 4.462 3.384 -2.754 H442 RAP 119
RAP H443 3H44 H 0 0 N N N N N N -26.178 -11.472 -15.281 6.030 3.519 -1.924 H443 RAP 120
RAP H451 1H45 H 0 0 N N N N N N -24.017 -20.509 -10.327 2.614 1.209 -9.332 H451 RAP 121
RAP H452 2H45 H 0 0 N N N N N N -24.823 -19.933 -11.887 1.744 -0.326 -9.564 H452 RAP 122
RAP H453 3H45 H 0 0 N N N N N N -23.224 -20.466 -11.996 1.047 1.192 -10.176 H453 RAP 123
RAP H461 1H46 H 0 0 N N N N N N -21.313 -15.286 -8.632 -2.599 2.366 -6.364 H461 RAP 124
RAP H462 2H46 H 0 0 N N N N N N -22.904 -16.093 -8.981 -1.246 2.810 -7.432 H462 RAP 125
RAP H463 3H46 H 0 0 N N N N N N -21.817 -16.871 -7.899 -2.648 1.931 -8.089 H463 RAP 126
RAP H471 1H47 H 0 0 N N N N N N -20.500 -15.067 -14.197 -5.946 -0.612 -2.329 H471 RAP 127
RAP H472 2H47 H 0 0 N N N N N N -18.760 -15.632 -14.229 -5.264 0.577 -3.465 H472 RAP 128
RAP H473 3H47 H 0 0 N N N N N N -19.941 -16.716 -13.637 -6.592 -0.488 -3.983 H473 RAP 129
RAP H481 1H48 H 0 0 N N N N N N -23.052 -12.234 -11.612 -5.438 -4.520 -1.851 H481 RAP 130
RAP H482 2H48 H 0 0 N N N N N N -22.779 -13.918 -10.863 -3.717 -4.441 -1.404 H482 RAP 131
RAP H483 3H48 H 0 0 N N N N N N -21.970 -12.640 -10.151 -4.970 -4.105 -0.185 H483 RAP 132
RAP H491 1H49 H 0 0 N N N N N N -16.555 -11.359 -16.682 -3.466 0.867 0.011 H491 RAP 133
RAP H492 2H49 H 0 0 N N N N N N -18.279 -11.761 -16.222 -4.838 -0.239 0.256 H492 RAP 134
RAP H493 3H49 H 0 0 N N N N N N -17.810 -10.117 -16.204 -4.794 1.325 1.104 H493 RAP 135
RAP H501 1H50 H 0 0 N N N N N N -26.060 -12.080 -19.029 9.215 0.306 -2.135 H501 RAP 136
RAP H502 2H50 H 0 0 N N N N N N -24.420 -12.888 -18.905 7.999 -0.722 -1.340 H502 RAP 137
RAP H503 3H50 H 0 0 N N N N N N -25.572 -13.237 -17.696 7.658 -0.012 -2.936 H503 RAP 138
RAP H511 1H51 H 0 0 N N N N N N -16.517 -19.958 -11.507 -1.603 1.563 -3.210 H511 RAP 139
RAP H512 2H51 H 0 0 N N N N N N -18.321 -19.990 -11.692 -1.686 1.760 -4.977 H512 RAP 140
RAP H513 3H51 H 0 0 N N N N N N -17.403 -19.011 -12.775 -3.160 1.926 -3.993 H513 RAP 141
RAP H521 1H52 H 0 0 N N N N N N -13.959 -17.537 -9.937 -8.029 1.697 6.893 H521 RAP 142
RAP H522 2H52 H 0 0 N N N N N N -14.345 -16.000 -9.028 -7.259 3.221 6.391 H522 RAP 143
RAP H523 3H52 H 0 0 N N N N N N -15.516 -16.600 -10.122 -7.911 2.107 5.165 H523 RAP 144
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RAP C1 O1 SING N N 1
RAP C1 O2 DOUB N N 2
RAP C1 C2 SING N N 3
RAP O1 C34 SING N N 4
RAP C2 C3 SING N N 5
RAP C2 N7 SING N N 6
RAP C2 H2 SING N N 7
RAP C3 C4 SING N N 8
RAP C3 H31A SING N N 9
RAP C3 H32 SING N N 10
RAP C4 C5 SING N N 11
RAP C4 H41 SING N N 12
RAP C4 H42 SING N N 13
RAP C5 C6 SING N N 14
RAP C5 H51 SING N N 15
RAP C5 H52 SING N N 16
RAP C6 N7 SING N N 17
RAP C6 H61 SING N N 18
RAP C6 H62 SING N N 19
RAP N7 C8 SING N N 20
RAP C8 O3 DOUB N N 21
RAP C8 C9 SING N N 22
RAP C9 O4 DOUB N N 23
RAP C9 C10 SING N N 24
RAP C10 O5 SING N N 25
RAP C10 O6 SING N N 26
RAP C10 C11 SING N N 27
RAP O5 C14 SING N N 28
RAP O6 HO6 SING N N 29
RAP C11 C12 SING N N 30
RAP C11 C43 SING N N 31
RAP C11 H11 SING N N 32
RAP C12 C13 SING N N 33
RAP C12 H121 SING N N 34
RAP C12 H122 SING N N 35
RAP C13 C14 SING N N 36
RAP C13 H131 SING N N 37
RAP C13 H132 SING N N 38
RAP C14 C15 SING N N 39
RAP C14 H14 SING N N 40
RAP C15 C16 SING N N 41
RAP C15 H151 SING N N 42
RAP C15 H152 SING N N 43
RAP C16 O7 SING N N 44
RAP C16 C17 SING N N 45
RAP C16 H16 SING N N 46
RAP O7 C50 SING N N 47
RAP C17 C18 DOUB N E 48
RAP C17 C44 SING N N 49
RAP C18 C19 SING N N 50
RAP C18 H18 SING N N 51
RAP C19 C20 DOUB N E 52
RAP C19 H19 SING N N 53
RAP C20 C21 SING N N 54
RAP C20 H20 SING N N 55
RAP C21 C22 DOUB N E 56
RAP C21 H21 SING N N 57
RAP C22 C23 SING N N 58
RAP C22 H22 SING N N 59
RAP C23 C24 SING N N 60
RAP C23 C45 SING N N 61
RAP C23 H23 SING N N 62
RAP C24 C25 SING N N 63
RAP C24 H241 SING N N 64
RAP C24 H242 SING N N 65
RAP C25 C26 SING N N 66
RAP C25 C46 SING N N 67
RAP C25 H25 SING N N 68
RAP C26 O8 DOUB N N 69
RAP C26 C27 SING N N 70
RAP C27 O9 SING N N 71
RAP C27 C28 SING N N 72
RAP C27 H27 SING N N 73
RAP O9 C51 SING N N 74
RAP C28 O10 SING N N 75
RAP C28 C29 SING N N 76
RAP C28 H28 SING N N 77
RAP O10 HO1 SING N N 78
RAP C29 C30 DOUB N E 79
RAP C29 C47 SING N N 80
RAP C30 C31 SING N N 81
RAP C30 H30 SING N N 82
RAP C31 C32 SING N N 83
RAP C31 C48 SING N N 84
RAP C31 H31 SING N N 85
RAP C32 O11 DOUB N N 86
RAP C32 C33 SING N N 87
RAP C33 C34 SING N N 88
RAP C33 H331 SING N N 89
RAP C33 H332 SING N N 90
RAP C34 C35 SING N N 91
RAP C34 H34 SING N N 92
RAP C35 C36 SING N N 93
RAP C35 C49 SING N N 94
RAP C35 H35 SING N N 95
RAP C36 C37 SING N N 96
RAP C36 H361 SING N N 97
RAP C36 H362 SING N N 98
RAP C37 C38 SING N N 99
RAP C37 C42 SING N N 100
RAP C37 H37 SING N N 101
RAP C38 C39 SING N N 102
RAP C38 H381 SING N N 103
RAP C38 H382 SING N N 104
RAP C39 O12 SING N N 105
RAP C39 C40 SING N N 106
RAP C39 H39 SING N N 107
RAP O12 C52 SING N N 108
RAP C40 O13 SING N N 109
RAP C40 C41 SING N N 110
RAP C40 H40 SING N N 111
RAP O13 HO3 SING N N 112
RAP C41 C42 SING N N 113
RAP C41 H411 SING N N 114
RAP C41 H412 SING N N 115
RAP C42 H421 SING N N 116
RAP C42 H422 SING N N 117
RAP C43 H431 SING N N 118
RAP C43 H432 SING N N 119
RAP C43 H433 SING N N 120
RAP C44 H441 SING N N 121
RAP C44 H442 SING N N 122
RAP C44 H443 SING N N 123
RAP C45 H451 SING N N 124
RAP C45 H452 SING N N 125
RAP C45 H453 SING N N 126
RAP C46 H461 SING N N 127
RAP C46 H462 SING N N 128
RAP C46 H463 SING N N 129
RAP C47 H471 SING N N 130
RAP C47 H472 SING N N 131
RAP C47 H473 SING N N 132
RAP C48 H481 SING N N 133
RAP C48 H482 SING N N 134
RAP C48 H483 SING N N 135
RAP C49 H491 SING N N 136
RAP C49 H492 SING N N 137
RAP C49 H493 SING N N 138
RAP C50 H501 SING N N 139
RAP C50 H502 SING N N 140
RAP C50 H503 SING N N 141
RAP C51 H511 SING N N 142
RAP C51 H512 SING N N 143
RAP C51 H513 SING N N 144
RAP C52 H521 SING N N 145
RAP C52 H522 SING N N 146
RAP C52 H523 SING N N 147
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RAP SMILES ACDLabs 10.04 O=C2C(C)CC(C=CC=CC=C(C)C(OC)CC4OC(O)(C(=O)C(=O)N3C(C(=O)OC(C(C)CC1CCC(O)C(OC)C1)CC(=O)C(C=C(C)C(O)C2OC)C)CCCC3)C(CC4)C)C
RAP SMILES_CANONICAL CACTVS 3.341 CO[C@@H]1C[C@@H](CC[C@H]1O)C[C@@H](C)[C@@H]2CC(=O)[C@H](C)/C=C(C)/[C@@H](O)[C@@H](OC)C(=O)[C@H](C)C[C@H](C)/C=C/C=C/C=C(C)/[C@H](C[C@@H]3CC[C@@H](C)[C@@](O)(O3)C(=O)C(=O)N4CCCC[C@H]4C(=O)O2)OC
RAP SMILES CACTVS 3.341 CO[CH]1C[CH](CC[CH]1O)C[CH](C)[CH]2CC(=O)[CH](C)C=C(C)[CH](O)[CH](OC)C(=O)[CH](C)C[CH](C)C=CC=CC=C(C)[CH](C[CH]3CC[CH](C)[C](O)(O3)C(=O)C(=O)N4CCCC[CH]4C(=O)O2)OC
RAP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[C@@H]1CC[C@H]2C[C@@H](C(=CC=C\C=C\[C@H](C[C@H](C(=O)[C@@H]([C@@H](/C(=C/[C@H](C(=O)C[C@H](OC(=O)[C@@H]3CCCCN3C(=O)C(=O)[C@@]1(O2)O)[C@H](C)C[C@@H]4CC[C@H]([C@@H](C4)OC)O)C)/C)O)OC)C)C)C)OC
RAP SMILES "OpenEye OEToolkits" 1.5.0 CC1CCC2CC(C(=CC=CC=CC(CC(C(=O)C(C(C(=CC(C(=O)CC(OC(=O)C3CCCCN3C(=O)C(=O)C1(O2)O)C(C)CC4CCC(C(C4)OC)O)C)C)O)OC)C)C)C)OC
RAP InChI InChI 1.03 InChI=1S/C51H79NO13/c1-30-16-12-11-13-17-31(2)42(61-8)28-38-21-19-36(7)51(60,65-38)48(57)49(58)52-23-15-14-18-39(52)50(59)64-43(33(4)26-37-20-22-40(53)44(27-37)62-9)29-41(54)32(3)25-35(6)46(56)47(63-10)45(55)34(5)24-30/h11-13,16-17,25,30,32-34,36-40,42-44,46-47,53,56,60H,14-15,18-24,26-29H2,1-10H3/b13-11+,16-12+,31-17+,35-25+/t30-,32-,33-,34-,36-,37+,38+,39+,40-,42+,43+,44-,46-,47+,51-/m1/s1
RAP InChIKey InChI 1.03 QFJCIRLUMZQUOT-HPLJOQBZSA-N
#
_pdbx_chem_comp_identifier.comp_id RAP
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
(3S,6R,7E,9R,10R,12R,14S,15E,17E,19E,21S,23S,26R,27R,34aS)-9,27-dihydroxy-3-{(1R)-2-[(1S,3R,4R)-4-hydroxy-3-methoxycyclohexyl]-1-methylethyl}-10,21-dimethoxy-6,8,12,14,20,26-hexamethyl-9,10,12,13,14,21,22,23,24,25,26,27,32,33,34,34a-hexadecahydro-3H-23,27-epoxypyrido[2,1-c][1,4]oxazacyclohentriacontine-1,5,11,28,29(4H,6H,31H)-pentone
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RAP 'Create component' 1999-07-08 RCSB
RAP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id RAP
_pdbe_chem_comp_drugbank_details.drugbank_id DB00877
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Sirolimus
_pdbe_chem_comp_drugbank_details.description
'Sirolimus, also known as rapamycin, is a macrocyclic lactone antibiotic produced by bacteria _Streptomyces hygroscopicus_, which was isolated from the soil of the Vai Atari region of Rapa Nui (Easter Island).[A242412] It was first isolated and identified as an antifungal agent with potent anticandida activity; however, after its potent antitumor and immunosuppressive activities were later discovered, it was extensively investigated as an immunosuppressive and antitumour agent.[A13448] Its primary mechanism of action is the inhibition of the mammalian target of rapamycin (mTOR), which is a serine/threonine-specific protein kinase that regulates cell growth, proliferation, and survival. mTOR is an important therapeutic target for various diseases, as it was shown to regulate longevity and maintain normal glucose homeostasis.[A242417] Targeting mTOR received more attention especially in cancer, as mTOR signalling pathways are constitutively activated in many types of human cancer.[A1320]  Sirolimus was first approved by the FDA in 1999 for the prophylaxis of organ rejection in patients aged 13 years and older receiving renal transplants.[A242372] In November 2000, the drug was recognized by the European Agency as an alternative to calcineurin antagonists for maintenance therapy with corticosteroids.[A242412] In May 2015, the FDA approved sirolimus for the treatment of patients with lymphangioleiomyomatosis.[L39292] In November 2021, albumin-bound sirolimus for intravenous injection was approved by the FDA for the treatment of adults with locally advanced unresectable or metastatic malignant perivascular epithelioid cell tumour (PEComa).[L39267] Sirolimus was also investigated in other cancers such as skin cancer, Kaposi’s Sarcoma, cutaneous T-cell lymphomas, and tuberous sclerosis.[A242372] The topical formulation of sirolimus, marketed as HYFTOR, was approved by the FDA in April 2022: this marks the first topical treatment approved in the US for facial angiofibroma associated with tuberous sclerosis complex.[L41494]'
_pdbe_chem_comp_drugbank_details.cas_number 53123-88-9
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Sirolimus works by inhibiting T-lymphocyte activation and proliferation stimulated by antigens and cytokines such as interleukin (IL)-2, IL-4, and IL-15. In target cells, sirolimus binds to the cytoplasmic receptor FK506-binding protein-12 (FKBP12), an immunophilin, to form an immunosuppressive complex. FKBP12-sirolimus complex binds to and inhibits the activation of the mammalian target of rapamycin (mTOR),[A1321, L19809] which is a serine/threonine-specific protein kinase that regulates cell growth, proliferation, survival, mobility, and angiogenesis.[A1320, A1321] mTOR regulates the downstream signalling pathways involved in cell survival, such as the phosphatidylinositol-3 kinase (PI3K)/Akt signalling pathway.[A1320] Inhibition of mTOR leads to the suppression of cytokine-driven T-cell proliferation, thus the progression from the G1 to the S phase of the cell cycle is inhibited. Sirolimus also inhibits antibody production. _In vitro_, sirolimus and other mTOR inhibitors inhibit the production of certain growth factors that may affect angiogenesis, fibroblast proliferation, and vascular permeability.[L19809]   Lymphangioleiomyomatosis is a disorder that primarily affects the lungs. It is characterized by lung tissue infiltration, unregulated alveolar smooth muscle proliferation, and cystic destruction of parenchyma. Although infrequent, it occurs as a symptomatic pulmonary complication in tuberous sclerosis complex (TSC), which is an inherited disorder caused by mutations in TSC genes.[A242437] Loss of functional TSC gene leads to the aberrant activation of the mTOR signalling pathway, resulting in cellular proliferation and release of lymphangiogenic growth factors. Sirolimus inhibits the activated mTOR pathway and proliferation of alveolar smooth muscle cell proliferation.[L19809]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
RAP (-)-Rapamycin DrugBank ?
RAP Rapamycin DrugBank ?
RAP Sirolimus DrugBank ?
RAP Sirolimusum DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id RAP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00877
_pdbe_chem_comp_drugbank_classification.parent 'Macrolide lactams'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Macrolide lactams'
_pdbe_chem_comp_drugbank_classification.superclass 'Phenylpropanoids and polyketides'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as macrolide lactams. These are cyclic polyketides containing  both a cyclic amide and a cyclic ester group.'
#
_pdbe_chem_comp_drugbank_targets.comp_id RAP
_pdbe_chem_comp_drugbank_targets.drugbank_id DB00877
_pdbe_chem_comp_drugbank_targets.name 'Serine/threonine-protein kinase mTOR'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P42345
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
RAP C1 C -3.106 0.281 1
RAP O1 O -1.611 0.399 2
RAP O2 O -2.721 1.731 3
RAP C2 C -4.356 1.131 4
RAP C3 C -4.475 2.645 5
RAP C4 C -5.828 3.293 6
RAP C5 C -7.065 2.449 7
RAP C6 C -6.970 0.939 8
RAP N7 N -5.589 0.287 9
RAP C8 C -5.061 -1.190 10
RAP O3 O -3.564 -1.300 11
RAP C9 C -5.715 -2.401 12
RAP O4 O -7.207 -2.299 13
RAP C10 C -5.161 -3.880 14
RAP O5 O -3.663 -3.632 15
RAP O6 O -6.656 -3.866 16
RAP C11 C -5.701 -5.277 17
RAP C12 C -4.758 -6.442 18
RAP C13 C -3.264 -6.228 19
RAP C14 C -2.722 -4.803 20
RAP C15 C -1.212 -4.670 21
RAP C16 C -0.352 -5.960 22
RAP O7 O -1.018 -7.322 23
RAP C17 C 1.163 -5.873 24
RAP C18 C 1.999 -7.151 25
RAP C19 C 3.498 -7.062 26
RAP C20 C 4.176 -5.706 27
RAP C21 C 5.672 -5.599 28
RAP C22 C 6.339 -4.237 29
RAP C23 C 7.834 -4.123 30
RAP C24 C 8.497 -2.759 31
RAP C25 C 7.640 -1.505 32
RAP C26 C 8.290 -0.153 33
RAP O8 O 9.786 -0.040 34
RAP C27 C 7.444 1.087 35
RAP O9 O 8.100 2.436 36
RAP C28 C 5.937 0.985 37
RAP O10 O 5.283 -0.365 38
RAP C29 C 5.091 2.224 39
RAP C30 C 3.579 2.104 40
RAP C31 C 2.725 3.361 41
RAP C32 C 1.227 3.252 42
RAP O11 O 0.390 4.496 43
RAP C33 C 0.548 1.879 44
RAP C34 C -0.964 1.755 45
RAP C35 C -1.817 2.992 46
RAP C36 C -1.173 4.349 47
RAP C37 C -2.023 5.587 48
RAP C38 C -1.382 6.941 49
RAP C39 C -2.229 8.177 50
RAP O12 O -1.584 9.531 51
RAP C40 C -3.727 8.059 52
RAP O13 O -4.576 9.294 53
RAP C41 C -4.368 6.704 54
RAP C42 C -3.522 5.468 55
RAP C43 C -7.183 -5.496 56
RAP C44 C 1.835 -4.540 57
RAP C45 C 8.677 -5.364 58
RAP C46 C 6.144 -1.619 59
RAP C47 C 5.739 3.578 60
RAP C48 C 3.378 4.711 61
RAP C49 C -3.312 2.872 62
RAP C50 C -0.179 -8.578 63
RAP C51 C 7.260 3.679 64
RAP C52 C -2.434 10.767 65
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
RAP C1 O1 SINGLE NONE 1
RAP C1 O2 DOUBLE NONE 2
RAP C1 C2 SINGLE NONE 3
RAP O1 C34 SINGLE NONE 4
RAP C2 C3 SINGLE NONE 5
RAP C2 N7 SINGLE NONE 6
RAP C3 C4 SINGLE NONE 7
RAP C4 C5 SINGLE NONE 8
RAP C5 C6 SINGLE NONE 9
RAP C6 N7 SINGLE NONE 10
RAP N7 C8 SINGLE NONE 11
RAP C8 O3 DOUBLE NONE 12
RAP C8 C9 SINGLE NONE 13
RAP C9 O4 DOUBLE NONE 14
RAP C9 C10 SINGLE NONE 15
RAP C10 O5 SINGLE NONE 16
RAP C10 O6 SINGLE BEGINWEDGE 17
RAP C10 C11 SINGLE NONE 18
RAP O5 C14 SINGLE NONE 19
RAP C11 C12 SINGLE NONE 20
RAP C11 C43 SINGLE BEGINWEDGE 21
RAP C12 C13 SINGLE NONE 22
RAP C13 C14 SINGLE NONE 23
RAP C14 C15 SINGLE NONE 24
RAP C15 C16 SINGLE NONE 25
RAP C16 O7 SINGLE BEGINWEDGE 26
RAP C16 C17 SINGLE ENDUPRIGHT 27
RAP O7 C50 SINGLE NONE 28
RAP C17 C18 DOUBLE NONE 29
RAP C17 C44 SINGLE ENDUPRIGHT 30
RAP C18 C19 SINGLE ENDUPRIGHT 31
RAP C19 C20 DOUBLE NONE 32
RAP C20 C21 SINGLE ENDUPRIGHT 33
RAP C21 C22 DOUBLE NONE 34
RAP C22 C23 SINGLE ENDUPRIGHT 35
RAP C23 C24 SINGLE NONE 36
RAP C23 C45 SINGLE BEGINDASH 37
RAP C24 C25 SINGLE NONE 38
RAP C25 C26 SINGLE NONE 39
RAP C25 C46 SINGLE BEGINWEDGE 40
RAP C26 O8 DOUBLE NONE 41
RAP C26 C27 SINGLE NONE 42
RAP C27 O9 SINGLE BEGINWEDGE 43
RAP C27 C28 SINGLE NONE 44
RAP O9 C51 SINGLE NONE 45
RAP C28 O10 SINGLE BEGINDASH 46
RAP C28 C29 SINGLE ENDUPRIGHT 47
RAP C29 C30 DOUBLE NONE 48
RAP C29 C47 SINGLE ENDUPRIGHT 49
RAP C30 C31 SINGLE ENDUPRIGHT 50
RAP C31 C32 SINGLE NONE 51
RAP C31 C48 SINGLE BEGINDASH 52
RAP C32 O11 DOUBLE NONE 53
RAP C32 C33 SINGLE NONE 54
RAP C34 C33 SINGLE BEGINDASH 55
RAP C34 C35 SINGLE NONE 56
RAP C35 C36 SINGLE NONE 57
RAP C35 C49 SINGLE BEGINDASH 58
RAP C37 C36 SINGLE BEGINDASH 59
RAP C37 C38 SINGLE NONE 60
RAP C37 C42 SINGLE NONE 61
RAP C38 C39 SINGLE NONE 62
RAP C39 O12 SINGLE BEGINDASH 63
RAP C39 C40 SINGLE NONE 64
RAP O12 C52 SINGLE NONE 65
RAP C40 O13 SINGLE BEGINWEDGE 66
RAP C40 C41 SINGLE NONE 67
RAP C41 C42 SINGLE NONE 68
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
RAP MurckoScaffold S1 scaffold 'O=C1CC/C=C/CC(=O)C[C@@H](CCC2CCCCC2)OC(=O)[C@@H]2CCCCN2C(=O)C(=O)C2CCC[C@@H](CC/C=C/C=C/C=C/CCC1)O2' InChI=1S/C41H59NO7/c43-33-21-12-6-4-2-1-3-5-7-15-24-35-25-18-27-38(48-35)39(45)40(46)42-30-17-16-26-37(42)41(47)49-36(29-28-32-19-10-8-11-20-32)31-34(44)23-14-9-13-22-33/h1-5,7,9,14,32,35-38H,6,8,10-13,15-31H2/b3-1+,4-2+,7-5+,14-9+/t35-,36-,37+,38-/m1/s1 HBUPNPNMLZLHHB-ZUINACPKSA-N
RAP amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
RAP cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
RAP peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
RAP pyranose F4 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
RAP C1 S1 1
RAP O1 S1 1
RAP O2 S1 1
RAP C2 S1 1
RAP C3 S1 1
RAP C4 S1 1
RAP C5 S1 1
RAP C6 S1 1
RAP N7 S1 1
RAP C8 S1 1
RAP O3 S1 1
RAP C9 S1 1
RAP O4 S1 1
RAP C10 S1 1
RAP O5 S1 1
RAP C11 S1 1
RAP C12 S1 1
RAP C13 S1 1
RAP C14 S1 1
RAP C15 S1 1
RAP C16 S1 1
RAP C17 S1 1
RAP C18 S1 1
RAP C19 S1 1
RAP C20 S1 1
RAP C21 S1 1
RAP C22 S1 1
RAP C23 S1 1
RAP C24 S1 1
RAP C25 S1 1
RAP C26 S1 1
RAP O8 S1 1
RAP C27 S1 1
RAP C28 S1 1
RAP C29 S1 1
RAP C30 S1 1
RAP C31 S1 1
RAP C32 S1 1
RAP O11 S1 1
RAP C33 S1 1
RAP C34 S1 1
RAP C35 S1 1
RAP C36 S1 1
RAP C37 S1 1
RAP C38 S1 1
RAP C39 S1 1
RAP C40 S1 1
RAP C41 S1 1
RAP C42 S1 1
RAP N7 F1 1
RAP C8 F1 1
RAP O3 F1 1
RAP C9 F1 1
RAP C37 F2 1
RAP C38 F2 1
RAP C39 F2 1
RAP C40 F2 1
RAP C41 F2 1
RAP C42 F2 1
RAP O2 F3 1
RAP C1 F3 1
RAP C2 F3 1
RAP N7 F3 1
RAP O4 F3 2
RAP C9 F3 2
RAP C8 F3 2
RAP N7 F3 2
RAP C13 F4 1
RAP C14 F4 1
RAP O5 F4 1
RAP C10 F4 1
RAP C11 F4 1
RAP C12 F4 1
RAP O6 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id RAP
_pdbe_chem_comp_rdkit_properties.exactmw 913.555
_pdbe_chem_comp_rdkit_properties.amw 914.187
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 13
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 65
_pdbe_chem_comp_rdkit_properties.NumAtoms 144
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.745
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 15
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 497.975
_pdbe_chem_comp_rdkit_properties.tpsa 195.430
_pdbe_chem_comp_rdkit_properties.CrippenClogP 6.181
_pdbe_chem_comp_rdkit_properties.CrippenMR 245.137
_pdbe_chem_comp_rdkit_properties.chi0v 31.254
_pdbe_chem_comp_rdkit_properties.chi1v 16.095
_pdbe_chem_comp_rdkit_properties.chi2v 6.899
_pdbe_chem_comp_rdkit_properties.chi3v 6.899
_pdbe_chem_comp_rdkit_properties.chi4v 3.993
_pdbe_chem_comp_rdkit_properties.chi0n 110.254
_pdbe_chem_comp_rdkit_properties.chi1n 55.320
_pdbe_chem_comp_rdkit_properties.chi2n 6.899
_pdbe_chem_comp_rdkit_properties.chi3n 6.899
_pdbe_chem_comp_rdkit_properties.chi4n 3.993
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.370
_pdbe_chem_comp_rdkit_properties.kappa1 10.982
_pdbe_chem_comp_rdkit_properties.kappa2 25.125
_pdbe_chem_comp_rdkit_properties.kappa3 14.322
_pdbe_chem_comp_rdkit_properties.Phi 4.245
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
RAP UniChem DrugBank DB00877
RAP UniChem 'Guide to Pharmacology' 6031
RAP UniChem 'PubChem DOTF' 12014635
RAP UniChem 'KEGG LIGAND' C07909
RAP UniChem ChEBI 9168
RAP UniChem ZINC ZINC000169289388
RAP UniChem atlas rapamycin
RAP UniChem atlas sirolimus
RAP UniChem fdasrs W36ZG6FT64
RAP UniChem HMDB HMDB0015015
RAP UniChem Selleck Rapamycin
RAP UniChem NMRShiftDB 60027859
RAP UniChem LINCS LSM-42782
RAP UniChem BindingDb 50064359
RAP UniChem LipidMaps LMPK06000003
RAP UniChem DrugCentral 2446
RAP UniChem MetaboLights MTBLC9168
RAP UniChem BRENDA 133748
RAP UniChem BRENDA 196831
RAP UniChem BRENDA 229856
RAP UniChem BRENDA 229857
RAP UniChem BRENDA 230092
RAP UniChem BRENDA 230093
RAP UniChem DailyMed SIROLIMUS
RAP UniChem ClinicalTrials AY-22989
RAP UniChem ClinicalTrials FYARRO
RAP UniChem ClinicalTrials L04AA10
RAP UniChem ClinicalTrials RAPALIMUS
RAP UniChem ClinicalTrials RAPAMUNE
RAP UniChem ClinicalTrials RAPAMYCIN
RAP UniChem ClinicalTrials SIROLIMUS
RAP UniChem ClinicalTrials WY-090217
RAP UniChem rxnorm RAPAMUNE
RAP UniChem rxnorm SIROLIMUS
RAP UniChem MedChemExpress HY-10219
RAP UniChem 'Probes And Drugs' PD003301
RAP UniChem CCDC RAPMCN
RAP UniChem eMolecules 30264609
RAP UniChem eMolecules 31590036
RAP UniChem eMolecules 36500353
RAP UniChem eMolecules 594011
RAP UniChem SureChEMBL SCHEMBL3463
RAP UniChem 'PubChem TPHARMA' 14816423
RAP UniChem 'PubChem TPHARMA' 14816426
RAP UniChem PubChem 5284616
RAP UniChem ACTor 53123-88-9
RAP UniChem BindingDb 36609
RAP UniChem 'EPA CompTox Dashboard' DTXSID5023582
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
RAP C1 2.586 -2.103 -1.626 ETKDGv3 1
RAP O1 2.726 -0.946 -0.851 ETKDGv3 2
RAP O2 2.237 -2.032 -2.837 ETKDGv3 3
RAP C2 2.942 -3.430 -1.014 ETKDGv3 4
RAP C3 4.448 -3.686 -1.208 ETKDGv3 5
RAP C4 4.854 -5.068 -0.678 ETKDGv3 6
RAP C5 3.866 -6.192 -1.054 ETKDGv3 7
RAP C6 2.801 -5.748 -2.063 ETKDGv3 8
RAP N7 2.132 -4.525 -1.588 ETKDGv3 9
RAP C8 0.692 -4.470 -1.498 ETKDGv3 10
RAP O3 0.158 -3.850 -0.539 ETKDGv3 11
RAP C9 -0.174 -5.115 -2.518 ETKDGv3 12
RAP O4 0.325 -5.447 -3.628 ETKDGv3 13
RAP C10 -1.647 -5.384 -2.250 ETKDGv3 14
RAP O5 -2.247 -4.167 -1.824 ETKDGv3 15
RAP O6 -2.260 -5.837 -3.442 ETKDGv3 16
RAP C11 -1.775 -6.466 -1.123 ETKDGv3 17
RAP C12 -2.987 -6.187 -0.209 ETKDGv3 18
RAP C13 -4.133 -5.550 -0.988 ETKDGv3 19
RAP C14 -3.665 -4.255 -1.712 ETKDGv3 20
RAP C15 -4.142 -2.982 -0.986 ETKDGv3 21
RAP C16 -5.655 -2.696 -1.117 ETKDGv3 22
RAP O7 -6.016 -2.672 -2.489 ETKDGv3 23
RAP C17 -5.947 -1.350 -0.475 ETKDGv3 24
RAP C18 -6.313 -1.307 0.824 ETKDGv3 25
RAP C19 -6.406 -0.062 1.610 ETKDGv3 26
RAP C20 -7.200 0.955 1.250 ETKDGv3 27
RAP C21 -7.115 2.308 1.838 ETKDGv3 28
RAP C22 -6.554 2.586 3.023 ETKDGv3 29
RAP C23 -6.167 3.999 3.381 ETKDGv3 30
RAP C24 -4.664 4.183 3.072 ETKDGv3 31
RAP C25 -4.202 5.666 3.031 ETKDGv3 32
RAP C26 -3.507 5.975 1.712 ETKDGv3 33
RAP O8 -4.208 6.287 0.759 ETKDGv3 34
RAP C27 -2.009 5.801 1.483 ETKDGv3 35
RAP O9 -1.615 6.569 0.354 ETKDGv3 36
RAP C28 -1.669 4.314 1.218 ETKDGv3 37
RAP O10 -1.747 3.588 2.417 ETKDGv3 38
RAP C29 -0.269 4.154 0.633 ETKDGv3 39
RAP C30 -0.135 3.630 -0.614 ETKDGv3 40
RAP C31 1.146 3.477 -1.417 ETKDGv3 41
RAP C32 2.259 2.787 -0.656 ETKDGv3 42
RAP O11 3.247 3.416 -0.302 ETKDGv3 43
RAP C33 2.159 1.324 -0.304 ETKDGv3 44
RAP C34 2.766 0.386 -1.373 ETKDGv3 45
RAP C35 4.226 0.760 -1.789 ETKDGv3 46
RAP C36 5.231 0.545 -0.624 ETKDGv3 47
RAP C37 6.681 1.021 -0.934 ETKDGv3 48
RAP C38 7.337 1.676 0.302 ETKDGv3 49
RAP C39 7.637 0.671 1.446 ETKDGv3 50
RAP O12 6.501 0.549 2.288 ETKDGv3 51
RAP C40 8.009 -0.741 0.919 ETKDGv3 52
RAP O13 8.939 -1.347 1.779 ETKDGv3 53
RAP C41 8.601 -0.675 -0.493 ETKDGv3 54
RAP C42 7.577 -0.121 -1.501 ETKDGv3 55
RAP C43 -1.815 -7.898 -1.683 ETKDGv3 56
RAP C44 -5.628 -0.091 -1.251 ETKDGv3 57
RAP C45 -6.483 4.269 4.856 ETKDGv3 58
RAP C46 -3.346 6.030 4.254 ETKDGv3 59
RAP C47 0.915 4.556 1.483 ETKDGv3 60
RAP C48 1.576 4.818 -2.028 ETKDGv3 61
RAP C49 4.642 -0.003 -3.058 ETKDGv3 62
RAP C50 -7.384 -2.982 -2.645 ETKDGv3 63
RAP C51 -1.238 7.872 0.745 ETKDGv3 64
RAP C52 6.616 1.393 3.413 ETKDGv3 65
RAP H2 2.739 -3.376 0.079 ETKDGv3 66
RAP H31A 5.039 -2.908 -0.680 ETKDGv3 67
RAP H32 4.702 -3.627 -2.290 ETKDGv3 68
RAP H41 4.940 -5.017 0.430 ETKDGv3 69
RAP H42 5.864 -5.314 -1.072 ETKDGv3 70
RAP H51 4.423 -7.059 -1.470 ETKDGv3 71
RAP H52 3.348 -6.542 -0.134 ETKDGv3 72
RAP H61 3.272 -5.551 -3.051 ETKDGv3 73
RAP H62 2.079 -6.584 -2.183 ETKDGv3 74
RAP HO6 -2.244 -5.084 -4.090 ETKDGv3 75
RAP H11 -0.882 -6.425 -0.459 ETKDGv3 76
RAP H121 -3.340 -7.117 0.289 ETKDGv3 77
RAP H122 -2.680 -5.483 0.598 ETKDGv3 78
RAP H131 -4.975 -5.361 -0.291 ETKDGv3 79
RAP H132 -4.500 -6.279 -1.743 ETKDGv3 80
RAP H14 -4.099 -4.243 -2.736 ETKDGv3 81
RAP H151 -3.582 -2.119 -1.410 ETKDGv3 82
RAP H152 -3.867 -3.048 0.090 ETKDGv3 83
RAP H16 -6.198 -3.502 -0.568 ETKDGv3 84
RAP H18 -6.386 -2.232 1.382 ETKDGv3 85
RAP H19 -5.765 0.007 2.476 ETKDGv3 86
RAP H20 -7.846 0.839 0.390 ETKDGv3 87
RAP H21 -7.467 3.123 1.217 ETKDGv3 88
RAP H22 -6.208 1.792 3.671 ETKDGv3 89
RAP H23 -6.760 4.714 2.767 ETKDGv3 90
RAP H241 -4.466 3.711 2.082 ETKDGv3 91
RAP H242 -4.063 3.597 3.803 ETKDGv3 92
RAP H25 -5.094 6.331 3.079 ETKDGv3 93
RAP H27 -1.453 6.111 2.398 ETKDGv3 94
RAP H28 -2.432 3.918 0.506 ETKDGv3 95
RAP HO1 -1.794 2.628 2.169 ETKDGv3 96
RAP H30 -1.035 3.327 -1.142 ETKDGv3 97
RAP H31 0.905 2.818 -2.280 ETKDGv3 98
RAP H331 1.087 1.057 -0.179 ETKDGv3 99
RAP H332 2.631 1.148 0.686 ETKDGv3 100
RAP H34 2.104 0.460 -2.265 ETKDGv3 101
RAP H35 4.245 1.834 -2.071 ETKDGv3 102
RAP H361 5.230 -0.520 -0.313 ETKDGv3 103
RAP H362 4.853 1.117 0.247 ETKDGv3 104
RAP H37 6.622 1.821 -1.706 ETKDGv3 105
RAP H381 6.703 2.511 0.674 ETKDGv3 106
RAP H382 8.294 2.142 -0.022 ETKDGv3 107
RAP H39 8.533 1.062 1.990 ETKDGv3 108
RAP H40 7.097 -1.381 0.868 ETKDGv3 109
RAP HO3 8.447 -1.586 2.608 ETKDGv3 110
RAP H411 8.918 -1.691 -0.814 ETKDGv3 111
RAP H412 9.507 -0.029 -0.485 ETKDGv3 112
RAP H421 8.135 0.258 -2.385 ETKDGv3 113
RAP H422 6.958 -0.968 -1.863 ETKDGv3 114
RAP H431 -0.942 -8.072 -2.347 ETKDGv3 115
RAP H432 -2.750 -8.075 -2.257 ETKDGv3 116
RAP H433 -1.767 -8.634 -0.852 ETKDGv3 117
RAP H441 -5.117 -0.323 -2.209 ETKDGv3 118
RAP H442 -6.561 0.454 -1.495 ETKDGv3 119
RAP H443 -4.948 0.565 -0.666 ETKDGv3 120
RAP H451 -6.292 5.334 5.102 ETKDGv3 121
RAP H452 -7.556 4.062 5.059 ETKDGv3 122
RAP H453 -5.864 3.627 5.519 ETKDGv3 123
RAP H461 -2.468 5.357 4.347 ETKDGv3 124
RAP H462 -3.947 5.937 5.182 ETKDGv3 125
RAP H463 -2.994 7.081 4.175 ETKDGv3 126
RAP H471 0.586 4.996 2.447 ETKDGv3 127
RAP H472 1.523 3.665 1.737 ETKDGv3 128
RAP H473 1.535 5.314 0.969 ETKDGv3 129
RAP H481 0.746 5.242 -2.634 ETKDGv3 130
RAP H482 2.449 4.666 -2.699 ETKDGv3 131
RAP H483 1.854 5.555 -1.249 ETKDGv3 132
RAP H491 3.862 0.095 -3.843 ETKDGv3 133
RAP H492 5.578 0.421 -3.477 ETKDGv3 134
RAP H493 4.804 -1.078 -2.845 ETKDGv3 135
RAP H501 -8.029 -2.297 -2.050 ETKDGv3 136
RAP H502 -7.655 -2.856 -3.713 ETKDGv3 137
RAP H503 -7.582 -4.041 -2.369 ETKDGv3 138
RAP H511 -1.050 8.475 -0.167 ETKDGv3 139
RAP H512 -2.046 8.375 1.323 ETKDGv3 140
RAP H513 -0.296 7.847 1.335 ETKDGv3 141
RAP H521 7.438 1.049 4.079 ETKDGv3 142
RAP H522 6.775 2.452 3.114 ETKDGv3 143
RAP H523 5.670 1.344 3.990 ETKDGv3 144
#