Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : R52    

Bonds between two atoms of the molecule

Total Number of Bonds: 24


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C1 O C doub 1.21 N N
2 C1 C4 C C sing 1.51 N N
3 O3 C4 O C sing 1.43 N N
4 C3 O4 C O sing 1.43 N N
5 C3 C2 C C sing 1.53 N N
6 C3 C4 C C sing 1.53 N N
7 C2 O5 C O sing 1.43 N N
8 C2 C5 C C sing 1.53 N N
9 C5 O6 C O sing 1.43 N N
10 O6 P1 O P sing 1.61 N N
11 P1 O9 P O doub 1.48 N N
12 P1 O7 P O sing 1.61 N N
13 P1 O8 P O sing 1.61 N N
14 C4 H4 C H sing 1.09 N N
15 O3 H3 O H sing 0.97 N N
16 C3 HA C H sing 1.09 N N
17 O4 HB O H sing 0.97 N N
18 C2 H2 C H sing 1.09 N N
19 O5 H5 O H sing 0.97 N N
20 C5 H5C1 C H sing 1.09 N N
21 C5 H5C2 C H sing 1.09 N N
22 O7 H7 O H sing 0.97 N N
23 O8 H8 O H sing 0.97 N N
24 C1 HC C H sing 1.08 N N