Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : R52

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 25


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2 O O2 N N N 0 -5.273 -0.06 -0.632
2 C1 C C1 N N N 0 -4.414 -0.664 -0.037
3 O3 O O3 N N N 0 -3.323 1.46 0.188
4 C3 C C3 R N N 0 -1.941 -0.498 -0.127
5 O4 O O4 N N N 0 -1.832 -1.887 0.189
6 C2 C C2 R N N 0 -0.723 0.248 0.422
7 O5 O O5 N N N 0 -0.832 1.637 0.107
8 C5 C C5 N N N 0 0.55 -0.32 -0.209
9 C4 C C4 R N N 0 -3.214 0.07 0.504
10 O6 O O6 N N N 0 1.693 0.294 0.389
11 P1 P P1 N N N 0 3.204 -0.065 -0.035
12 O9 O O9 N N N 0 3.418 -1.524 0.093
13 O7 O O7 N N N 0 3.454 0.382 -1.561
14 O8 O O8 N N N 0 4.232 0.715 0.929
15 H4 H H4 N N N 0 -3.17 -0.054 1.586
16 H3 H H3 N N N 0 -3.368 1.645 -0.76
17 HA H HA N N N 0 -1.985 -0.373 -1.209
18 HB H HB N N N 0 -1.788 -2.073 1.137
19 H2 H H2 N N N 0 -0.679 0.123 1.504
20 H5 H H5 N N N 0 -0.877 1.823 -0.841
21 H5C1 H 1H5C N N N 0 0.588 -1.397 -0.044
22 H5C2 H 2H5C N N N 0 0.546 -0.117 -1.28
23 H7 H H7 N N N 0 3.331 1.328 -1.719
24 H8 H H8 N N N 0 5.163 0.544 0.73
25 HC H HC N N N 0 -4.507 -1.73 0.111