Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PMZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S5 C5 S C sing 1.76 N N
2 S5 C7 S C sing 1.76 N N
3 N1 C6 N C sing 1.39 N N
4 N1 C12 N C sing 1.39 N N
5 N1 CA1 N C sing 1.46 N N
6 C1 C2 C C doub 1.4 N Y
7 C1 C6 C C sing 1.38 N Y
8 C1 H1 C H sing 1.08 N N
9 C2 C3 C C sing 1.4 N Y
10 C2 CA2 C C sing 1.47 N N
11 C3 C4 C C doub 1.37 N Y
12 C3 H3 C H sing 1.08 N N
13 C4 C5 C C sing 1.4 N Y
14 C4 H4 C H sing 1.08 N N
15 C5 C6 C C doub 1.4 N Y
16 C7 C8 C C doub 1.39 N Y
17 C7 C12 C C sing 1.39 N Y
18 C8 C9 C C sing 1.38 N Y
19 C8 H8 C H sing 1.08 N N
20 C9 C10 C C doub 1.38 N Y
21 C9 H9 C H sing 1.08 N N
22 C10 C11 C C sing 1.38 N Y
23 C10 H10 C H sing 1.08 N N
24 C11 C12 C C doub 1.39 N Y
25 C11 H11 C H sing 1.08 N N
26 CA1 CB1 C C sing 1.53 N N
27 CA1 HA11 C H sing 1.09 N N
28 CA1 HA12 C H sing 1.09 N N
29 CB1 CG C C sing 1.53 N N
30 CB1 HB11 C H sing 1.09 N N
31 CB1 HB12 C H sing 1.09 N N
32 CG ND C N sing 1.47 N N
33 CG HG1 C H sing 1.09 N N
34 CG HG2 C H sing 1.09 N N
35 ND CE1 N C sing 1.47 N N
36 ND CE2 N C sing 1.47 N N
37 CE1 HE11 C H sing 1.09 N N
38 CE1 HE12 C H sing 1.09 N N
39 CE1 HE13 C H sing 1.09 N N
40 CE2 HE21 C H sing 1.09 N N
41 CE2 HE22 C H sing 1.09 N N
42 CE2 HE23 C H sing 1.09 N N
43 CA2 CB2 C C sing 1.51 N N
44 CA2 OB3 C O doub 1.21 N N
45 CB2 HB21 C H sing 1.09 N N
46 CB2 HB22 C H sing 1.09 N N
47 CB2 HB23 C H sing 1.09 N N